Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_E14
(300 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_54813| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.011
SB_702| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.23
SB_16540| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 0.92
SB_26250| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 1.2
SB_55021| Best HMM Match : EGF_CA (HMM E-Value=1.4013e-45) 28 1.6
SB_45877| Best HMM Match : Borrelia_orfA (HMM E-Value=0.23) 27 2.8
SB_27957| Best HMM Match : PHD (HMM E-Value=8.2e-15) 26 4.9
SB_5695| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 4.9
SB_41954| Best HMM Match : SWIM (HMM E-Value=8.9) 26 6.5
SB_18302| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 6.5
SB_55803| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 8.6
SB_21989| Best HMM Match : Spectrin (HMM E-Value=0) 25 8.6
SB_50519| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 8.6
SB_12192| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 8.6
SB_2883| Best HMM Match : Exo_endo_phos (HMM E-Value=2.1e-09) 25 8.6
>SB_54813| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 422
Score = 35.1 bits (77), Expect = 0.011
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = +3
Query: 144 ELLCSSLSEHLQE--KGVSTEDTIEIEYLVRFPAPTPQDCLMHDDWVSAVHTH 296
+L+C S L E S+EDT+ + +L P P+ C+ ++W +HT+
Sbjct: 337 DLICLSTDSELSEAMSHQSSEDTVRV-FLKTADTPAPEQCISPEEWWKNLHTY 388
>SB_702| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1396
Score = 30.7 bits (66), Expect = 0.23
Identities = 16/54 (29%), Positives = 26/54 (48%)
Frame = -3
Query: 277 TQSSCIKQSCGVGAGNLTRYSISIVSSVDTPFSCKCSDSDEHNSSPHTRKSNSM 116
T +S + G ++T + V S T + CK SDS+E N S + + N +
Sbjct: 1251 TLNSKHNEDVGTRHPHITDFLARKVRSPKTAYHCKTSDSEERNESAESDEENEL 1304
>SB_16540| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 145
Score = 28.7 bits (61), Expect = 0.92
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +3
Query: 135 VCGELLCSSLSEHLQEKGVSTEDTIEIEYLVRFPAPTPQD 254
+C CS +++L+EKG++ D EI+ P TPQ+
Sbjct: 103 ICDFDSCSCGTDNLKEKGINETDKTEIKKGRMVPLLTPQN 142
>SB_26250| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 292
Score = 28.3 bits (60), Expect = 1.2
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = +3
Query: 69 LINALLKETAPTVEKAIEFDFLVCGELLCSSLSEHLQEKGV-STEDTIEIEYL 224
+I +L P K E DFL G LC +++ +L KGV T ++I YL
Sbjct: 66 IITYILGPNDPEEMKYFEADFLEDGTELCENIT-YLGRKGVLKTPSGLQIAYL 117
>SB_55021| Best HMM Match : EGF_CA (HMM E-Value=1.4013e-45)
Length = 348
Score = 27.9 bits (59), Expect = 1.6
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -3
Query: 175 KCSDSDEHNSSPHTRKSNSMAFSTVGA 95
KC+D DE S P+ SN+ +TVG+
Sbjct: 11 KCADRDECQSLPNACTSNAACSNTVGS 37
>SB_45877| Best HMM Match : Borrelia_orfA (HMM E-Value=0.23)
Length = 734
Score = 27.1 bits (57), Expect = 2.8
Identities = 14/55 (25%), Positives = 25/55 (45%)
Frame = -3
Query: 229 LTRYSISIVSSVDTPFSCKCSDSDEHNSSPHTRKSNSMAFSTVGAVSFNNALIKE 65
+TR + V+S D P D+D+ S H + +G +S N +++E
Sbjct: 342 MTRSEFTQVTSNDLPDKEPDKDADDAEDSSHPSQEMRECLRQIGELSDKNRIVEE 396
>SB_27957| Best HMM Match : PHD (HMM E-Value=8.2e-15)
Length = 111
Score = 26.2 bits (55), Expect = 4.9
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = -2
Query: 251 LWCWCRKPH 225
LWC CRKPH
Sbjct: 46 LWCICRKPH 54
>SB_5695| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 665
Score = 26.2 bits (55), Expect = 4.9
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = +3
Query: 117 IEFDFLVCGELLCSSLSEHLQEKGVSTEDTIEIEYLVRFP 236
IE F VCG +L ++ L +K ++ +++ +V FP
Sbjct: 315 IEARFPVCGLILLGDFNKTLMQKNPRLCNSFKLKQIVTFP 354
>SB_41954| Best HMM Match : SWIM (HMM E-Value=8.9)
Length = 101
Score = 25.8 bits (54), Expect = 6.5
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = -3
Query: 166 DSDEHNSSPHTRKSNSMAFSTVGAVSFNNA 77
D +HN++P++ + S + G SFN+A
Sbjct: 2 DFQDHNNTPYSTNAASTQNTGTGRASFNSA 31
>SB_18302| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 107
Score = 25.8 bits (54), Expect = 6.5
Identities = 17/49 (34%), Positives = 25/49 (51%)
Frame = +3
Query: 150 LCSSLSEHLQEKGVSTEDTIEIEYLVRFPAPTPQDCLMHDDWVSAVHTH 296
L +L E L +G T DT ++ +R P+ T + DDW+ A TH
Sbjct: 51 LAVTLKEVLCSQGGLTGDTGKV---LRMPSLTKSCTDLTDDWLIAGRTH 96
>SB_55803| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 190
Score = 25.4 bits (53), Expect = 8.6
Identities = 13/54 (24%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = -3
Query: 232 NLTRY-SISIVSSVDTPFSCKCSDSDEHNSSPHTRKSNSMAFSTVGAVSFNNAL 74
N TR+ S+ + +T ++ HNS P+T + N+ +++ + + +N+L
Sbjct: 80 NTTRHNSLHNTTKHNTTRHNSLHNTTRHNSLPNTTRHNTTRHNSLNSTTMHNSL 133
>SB_21989| Best HMM Match : Spectrin (HMM E-Value=0)
Length = 1805
Score = 25.4 bits (53), Expect = 8.6
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = +3
Query: 6 RAVSDSPYAIQSNIESSELNSLINALLKETAPTVEKAIEFDF 131
R S +PYA + ELN AL ++ T +KA E F
Sbjct: 1341 RRGSGTPYADHVTMMQQELNDRWRALCQQLGVTYKKAEETKF 1382
>SB_50519| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 85
Score = 25.4 bits (53), Expect = 8.6
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +3
Query: 210 EIEYLVRFPAPTPQDCLMHDDWVS 281
E +++++ + T QDC H DW S
Sbjct: 5 EEDHVIKDTSRTVQDCSSHPDWQS 28
>SB_12192| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1339
Score = 25.4 bits (53), Expect = 8.6
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = +3
Query: 117 IEFDFLVCGELLCSSLSEHLQEKGVSTEDTIEIEYLVRFP 236
IE F VCG +L ++ L +K ++ +++ +V FP
Sbjct: 626 IEARFPVCGLILLGDFNKTLMQKTPRLCNSFKLKQIVTFP 665
>SB_2883| Best HMM Match : Exo_endo_phos (HMM E-Value=2.1e-09)
Length = 598
Score = 25.4 bits (53), Expect = 8.6
Identities = 12/51 (23%), Positives = 20/51 (39%)
Frame = -3
Query: 292 VWTADTQSSCIKQSCGVGAGNLTRYSISIVSSVDTPFSCKCSDSDEHNSSP 140
++ A SSC+ + C G N + + + V C DS + P
Sbjct: 131 IYDALANSSCVWECCACGMPNFSSSLLDSFAMVQCSNQFSCLDSSDTTLGP 181
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,101,819
Number of Sequences: 59808
Number of extensions: 201161
Number of successful extensions: 643
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 525
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 643
length of database: 16,821,457
effective HSP length: 71
effective length of database: 12,575,089
effective search space used: 352102492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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