Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_E14
(300 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g15550.2 68418.m01821 transducin family protein / WD-40 repea... 71 1e-13
At5g15550.1 68418.m01820 transducin family protein / WD-40 repea... 71 1e-13
At5g14220.1 68418.m01661 protoporphyrinogen oxidase, putative si... 33 0.047
At5g19610.1 68418.m02334 sec7 domain-containing protein similar ... 30 0.33
At4g14310.2 68417.m02205 peroxisomal membrane protein-related co... 28 1.0
At4g14310.1 68417.m02204 peroxisomal membrane protein-related co... 28 1.0
At5g39970.1 68418.m04847 expressed protein low similarity to up-... 28 1.3
At5g46940.1 68418.m05787 invertase/pectin methylesterase inhibit... 27 1.8
At2g01450.1 68415.m00068 mitogen-activated protein kinase, putat... 27 1.8
At3g18750.1 68416.m02380 protein kinase family protein contains ... 27 2.3
At5g02070.1 68418.m00128 protein kinase-related contains eukaryo... 27 3.1
At4g01023.1 68417.m00138 zinc finger (C3HC4-type RING finger) fa... 27 3.1
At1g09570.1 68414.m01073 phytochrome A (PHYA) identical to SP|P1... 27 3.1
At3g47770.1 68416.m05204 ABC transporter family protein AbcA, Di... 26 4.1
At3g20300.1 68416.m02572 expressed protein 26 4.1
At2g31380.1 68415.m03835 zinc finger (B-box type) family protein... 26 4.1
At5g40450.1 68418.m04905 expressed protein 26 5.4
At1g66500.1 68414.m07554 zinc finger (C2H2-type) family protein ... 26 5.4
At5g46960.1 68418.m05789 invertase/pectin methylesterase inhibit... 25 7.1
At3g28715.1 68416.m03584 H+-transporting two-sector ATPase, puta... 25 7.1
At3g28710.1 68416.m03583 H+-transporting two-sector ATPase, puta... 25 7.1
At3g10000.1 68416.m01200 DNA-binding protein-related similar to ... 25 7.1
At2g32270.1 68415.m03944 zinc transporter (ZIP3) identical to zi... 25 7.1
At1g34480.1 68414.m04285 DC1 domain-containing protein contains ... 25 7.1
At3g21220.1 68416.m02682 mitogen-activated protein kinase kinase... 25 9.4
At3g17611.2 68416.m02250 rhomboid family protein / zinc finger p... 25 9.4
At3g17611.1 68416.m02249 rhomboid family protein / zinc finger p... 25 9.4
At3g08760.1 68416.m01018 protein kinase family protein contains ... 25 9.4
At2g40620.1 68415.m05010 bZIP transcription factor family protei... 25 9.4
At2g01660.2 68415.m00093 33 kDa secretory protein-related contai... 25 9.4
At2g01660.1 68415.m00092 33 kDa secretory protein-related contai... 25 9.4
At1g02980.1 68414.m00268 cullin family protein similar to cullin... 25 9.4
>At5g15550.2 68418.m01821 transducin family protein / WD-40 repeat
family protein similar to YTM1 - Homo sapiens,
EMBL:AF242546; contains Pfam PF00400: WD domain, G-beta
repeat (7 copies,1 weak);
Length = 402
Score = 71.3 bits (167), Expect = 1e-13
Identities = 37/87 (42%), Positives = 54/87 (62%)
Frame = +3
Query: 30 AIQSNIESSELNSLINALLKETAPTVEKAIEFDFLVCGELLCSSLSEHLQEKGVSTEDTI 209
AI SN+ L+S++N++++ P K FDFL+ GEL+ SL E L KG+S E T+
Sbjct: 32 AIPSNVTRLGLSSIVNSIIESENPEW-KTEPFDFLIDGELIRMSLEEFLLAKGISAERTL 90
Query: 210 EIEYLVRFPAPTPQDCLMHDDWVSAVH 290
EIEY+ ++ +HDDWVSAV+
Sbjct: 91 EIEYIRAVTPRKEEEPSLHDDWVSAVN 117
>At5g15550.1 68418.m01820 transducin family protein / WD-40 repeat
family protein similar to YTM1 - Homo sapiens,
EMBL:AF242546; contains Pfam PF00400: WD domain, G-beta
repeat (7 copies,1 weak);
Length = 433
Score = 71.3 bits (167), Expect = 1e-13
Identities = 37/87 (42%), Positives = 54/87 (62%)
Frame = +3
Query: 30 AIQSNIESSELNSLINALLKETAPTVEKAIEFDFLVCGELLCSSLSEHLQEKGVSTEDTI 209
AI SN+ L+S++N++++ P K FDFL+ GEL+ SL E L KG+S E T+
Sbjct: 32 AIPSNVTRLGLSSIVNSIIESENPEW-KTEPFDFLIDGELIRMSLEEFLLAKGISAERTL 90
Query: 210 EIEYLVRFPAPTPQDCLMHDDWVSAVH 290
EIEY+ ++ +HDDWVSAV+
Sbjct: 91 EIEYIRAVTPRKEEEPSLHDDWVSAVN 117
>At5g14220.1 68418.m01661 protoporphyrinogen oxidase, putative
similar to protoporphyrinogen IX oxidase, mitochondrial
(PPO II) from Nicotiana tabacum [SP|O24164], Glycine
max, AB025102, Spinacia oleracea [GI:14349153]; contains
Pfam amine oxidase, flavin-containing domain [PF015930]
Length = 508
Score = 32.7 bits (71), Expect = 0.047
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = -3
Query: 208 IVSSVDTPFSCKCSDSDEHNSSPHTRKSNSMAFSTVGAVS-FNNALIKELSSDD 50
IV ++ T F+ K S + SSP T+K + +FS G + + L K LS D+
Sbjct: 208 IVGAIRTKFAAKGGKSRDTKSSPGTKKGSRGSFSFKGGMQILPDTLCKSLSHDE 261
>At5g19610.1 68418.m02334 sec7 domain-containing protein similar to
SP|Q42510 Pattern formation protein EMB30 (GNOM)
{Arabidopsis thaliana}; contains Pfam profile PF01369:
Sec7 domain
Length = 1375
Score = 29.9 bits (64), Expect = 0.33
Identities = 18/50 (36%), Positives = 27/50 (54%)
Frame = +3
Query: 60 LNSLINALLKETAPTVEKAIEFDFLVCGELLCSSLSEHLQEKGVSTEDTI 209
L ++ N L P VEK + F VC ++L S+L +HL E+ + TI
Sbjct: 984 LLNVANFPLFSPIPFVEKGLPGLFRVCIKILASNLQDHLPEELIFRSLTI 1033
>At4g14310.2 68417.m02205 peroxisomal membrane protein-related
contains weak similarity to Peroxisomal membrane protein
2 (22 kDa peroxisomal membrane protein)
(Swiss-Prot:P42925) [Mus musculus]
Length = 965
Score = 28.3 bits (60), Expect = 1.0
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +3
Query: 3 TRAVSDSPYAIQSNIESSELNSLINALLKETAPTVEKAIEFDFL 134
+R S + + +S E N +NA K +AP E AI +FL
Sbjct: 390 SRTQSKTSSHVSKGHDSVESNKAVNAEEKPSAPVEENAIALEFL 433
>At4g14310.1 68417.m02204 peroxisomal membrane protein-related
contains weak similarity to Peroxisomal membrane protein
2 (22 kDa peroxisomal membrane protein)
(Swiss-Prot:P42925) [Mus musculus]
Length = 1087
Score = 28.3 bits (60), Expect = 1.0
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +3
Query: 3 TRAVSDSPYAIQSNIESSELNSLINALLKETAPTVEKAIEFDFL 134
+R S + + +S E N +NA K +AP E AI +FL
Sbjct: 390 SRTQSKTSSHVSKGHDSVESNKAVNAEEKPSAPVEENAIALEFL 433
>At5g39970.1 68418.m04847 expressed protein low similarity to
up-regulated by thyroid hormone in tadpoles; expressed
specifically in the tail and only at metamorphosis;
membrane bound or extracellular protein; C-terminal
basic region [Xenopus laevis] GI:1234787
Length = 690
Score = 27.9 bits (59), Expect = 1.3
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = -3
Query: 244 VGAGNLTRYSISIVSSVDTPFSCKCSDSDEHNSSP 140
VG+GN T I + + D+P C +SSP
Sbjct: 572 VGSGNFTSSHIPLQCASDSPIPCSSETEPSSSSSP 606
>At5g46940.1 68418.m05787 invertase/pectin methylesterase inhibitor
family protein low similarity to SP|P83326
Pectinesterase inhibitor (Pectin methylesterase
inhibitor) (PMEI) {Actinidia chinensis}; contains Pfam
profile PF04043: Plant invertase/pectin methylesterase
inhibitor
Length = 176
Score = 27.5 bits (58), Expect = 1.8
Identities = 15/69 (21%), Positives = 33/69 (47%)
Frame = -3
Query: 280 DTQSSCIKQSCGVGAGNLTRYSISIVSSVDTPFSCKCSDSDEHNSSPHTRKSNSMAFSTV 101
D S + GV + N + +++DTP +C+ + SP T++++++ +
Sbjct: 107 DAIGSLNEALAGVKSRNYPTVKTVLSAAMDTPSTCETGFKERKAPSPVTKENDNLYQMIL 166
Query: 100 GAVSFNNAL 74
++F N L
Sbjct: 167 IPLAFTNML 175
>At2g01450.1 68415.m00068 mitogen-activated protein kinase, putative
/ MAPK, putative (MPK17) mitogen-activated protein
kinase (MAPK)(AtMPK17), PMID:12119167
Length = 486
Score = 27.5 bits (58), Expect = 1.8
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = -3
Query: 166 DSDEHNSSPHTRKSNSM 116
D +EHNS PH RK S+
Sbjct: 391 DEEEHNSPPHQRKYTSL 407
>At3g18750.1 68416.m02380 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 567
Score = 27.1 bits (57), Expect = 2.3
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = +3
Query: 69 LINALLKETAPTVEKAIEFDFLVCGELLCSSLSEHLQEKGVSTEDTI 209
LI+ LL PT + + D L+ +L +S S H + K E+T+
Sbjct: 426 LIDILLVNMIPTWKTDVTVDHLIHSQLNQNSRSHHNEAKPQKQEETV 472
>At5g02070.1 68418.m00128 protein kinase-related contains eukaryotic
protein kinase domain, INTERPRO:IPR000719
Length = 657
Score = 26.6 bits (56), Expect = 3.1
Identities = 18/65 (27%), Positives = 29/65 (44%)
Frame = +3
Query: 33 IQSNIESSELNSLINALLKETAPTVEKAIEFDFLVCGELLCSSLSEHLQEKGVSTEDTIE 212
I ++ L I+ LLK+TA ++ G L + L+E Q + E E
Sbjct: 586 INKMMDQERLTECIDPLLKKTANKIDMQT---IQQLGNLASACLNERRQNRPSMKEVADE 642
Query: 213 IEYLV 227
IEY++
Sbjct: 643 IEYII 647
>At4g01023.1 68417.m00138 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 236
Score = 26.6 bits (56), Expect = 3.1
Identities = 16/36 (44%), Positives = 21/36 (58%)
Frame = +3
Query: 39 SNIESSELNSLINALLKETAPTVEKAIEFDFLVCGE 146
SN ESS L L + KETA + +E DF++ GE
Sbjct: 45 SNNESSRLEKLEKKIKKETA----RKLETDFVLTGE 76
>At1g09570.1 68414.m01073 phytochrome A (PHYA) identical to
SP|P14712 Phytochrome A {Arabidopsis thaliana}
Length = 1122
Score = 26.6 bits (56), Expect = 3.1
Identities = 13/55 (23%), Positives = 26/55 (47%)
Frame = +3
Query: 15 SDSPYAIQSNIESSELNSLINALLKETAPTVEKAIEFDFLVCGELLCSSLSEHLQ 179
+D P A + +++ +++ K ++ + FD +CG L + S HLQ
Sbjct: 272 TDIPQAARFLFMKNKVRMIVDCNAKHARVLQDEKLSFDLTLCGSTLRAPHSCHLQ 326
>At3g47770.1 68416.m05204 ABC transporter family protein AbcA,
Dictyostelium discoideum, U66526
Length = 900
Score = 26.2 bits (55), Expect = 4.1
Identities = 11/39 (28%), Positives = 19/39 (48%)
Frame = -3
Query: 202 SSVDTPFSCKCSDSDEHNSSPHTRKSNSMAFSTVGAVSF 86
+SVD C+C+D D++ KS + +S+ F
Sbjct: 58 NSVDNQCGCRCADDDKNGDGKCEIKSCGLQYSSQNQAVF 96
>At3g20300.1 68416.m02572 expressed protein
Length = 452
Score = 26.2 bits (55), Expect = 4.1
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = -3
Query: 211 SIVSSVDTPFSCKCSDSDEHNSSPHTRKSNSMAFSTVGAVSF 86
++V + F CSD D H+S P+ ++ S+ A+SF
Sbjct: 74 TLVVPATSHFMLACSDCDSHHSRPYD-SVVQLSLSSFAALSF 114
>At2g31380.1 68415.m03835 zinc finger (B-box type) family protein /
salt tolerance-like protein (STH) contains Pfam profile
PF00643: B-box zinc finger; identical to cDNA B-box zinc
finger protein STH GI:12698721, SP|Q9SID1 Salt
tolerance-like protein (Arabidopsis thaliana)
Length = 238
Score = 26.2 bits (55), Expect = 4.1
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = -3
Query: 172 CSDSDEHNSSPHTRKSNSMAFSTVG 98
C D DE +P+TR +N F G
Sbjct: 77 CRDCDEATHAPNTRSANHQRFLATG 101
>At5g40450.1 68418.m04905 expressed protein
Length = 2910
Score = 25.8 bits (54), Expect = 5.4
Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 3/91 (3%)
Frame = +3
Query: 33 IQSNIESSELNSLINALLKETAPTVEKAIEFDFLVCGELLCSSLSEHLQEKGVSTEDTIE 212
+Q E SE + +++KET PT+++ SLS+H+Q++ + ED +
Sbjct: 2792 LQKKDEESENTKDLFSVVKETEPTLKEPAR-----------KSLSDHIQKEPKTEEDEND 2840
Query: 213 IE-YLVRFPAPTPQDCLMHD--DWVSAVHTH 296
E + + +P +M + D VS V TH
Sbjct: 2841 DEDHEHKDDKTSPDSIVMVEAKDTVSIVKTH 2871
>At1g66500.1 68414.m07554 zinc finger (C2H2-type) family protein
contains Prosite PS00028: Zinc finger, C2H2 type,
domain; similar to S-locus protein 4 (GI:6069478)
[Brassica rapa]; similar to Pre-mRNA cleavage complex II
protein Pcf11 (Fragment) (Swiss-Prot:O94913) [Homo
sapiens]
Length = 416
Score = 25.8 bits (54), Expect = 5.4
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = -3
Query: 154 HNSSPHTRKSNSMAFSTVGAVSFNNALIKELSSDDSILL 38
HN H SN+ S V + S+NN + ++S+ S L
Sbjct: 61 HNPLYHHHGSNNNNVSRVSSQSYNNCGVDVIASNSSFAL 99
>At5g46960.1 68418.m05789 invertase/pectin methylesterase inhibitor
family protein low similarity to SP|P83326
Pectinesterase inhibitor (Pectin methylesterase
inhibitor) (PMEI) {Actinidia chinensis}; contains Pfam
profile PF04043: Plant invertase/pectin methylesterase
inhibitor
Length = 174
Score = 25.4 bits (53), Expect = 7.1
Identities = 14/49 (28%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Frame = -3
Query: 217 SISIVSSVDTPFSCKCSDSDEHNSSPHTRKSNSMAFSTV-GAVSFNNAL 74
+I++ +++D P +C+ + +SP T + NS+ F T+ ++F N L
Sbjct: 127 NINLSAALDVPGNCEDDFKEAKKTSPITNE-NSILFKTILIPLAFTNML 174
>At3g28715.1 68416.m03584 H+-transporting two-sector ATPase,
putative similar to SP|P54641 Vacuolar ATP synthase
subunit d (EC 3.6.3.14) (Vacuolar proton pump d subunit)
(V-ATPase 41 KDa accessory protein) {Dictyostelium
discoideum}; contains Pfam profile PF01992: ATP synthase
(C/AC39) subunit
Length = 351
Score = 25.4 bits (53), Expect = 7.1
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = -1
Query: 246 VLVQETSPDTLFL*YLQLIHLSLANVLIVTST 151
+L Q T P + FL Y++ H+ VLIVT T
Sbjct: 85 MLCQATEPMSTFLEYIRYGHMIDNVVLIVTGT 116
>At3g28710.1 68416.m03583 H+-transporting two-sector ATPase,
putative similar to SP|P54641 Vacuolar ATP synthase
subunit d (EC 3.6.3.14) (Vacuolar proton pump d subunit)
(V-ATPase 41 KDa accessory protein) {Dictyostelium
discoideum}; contains Pfam profile PF01992: ATP synthase
(C/AC39) subunit
Length = 351
Score = 25.4 bits (53), Expect = 7.1
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = -1
Query: 246 VLVQETSPDTLFL*YLQLIHLSLANVLIVTST 151
+L Q T P + FL Y++ H+ VLIVT T
Sbjct: 85 MLCQATEPMSTFLEYIRYGHMIDNVVLIVTGT 116
>At3g10000.1 68416.m01200 DNA-binding protein-related similar to
GT-2 factor [Arabidopsis thaliana GI:416490
Length = 496
Score = 25.4 bits (53), Expect = 7.1
Identities = 16/73 (21%), Positives = 31/73 (42%), Gaps = 2/73 (2%)
Frame = -3
Query: 226 TRYSISIVSSVDTPFSCKCSDSDE--HNSSPHTRKSNSMAFSTVGAVSFNNALIKELSSD 53
T+ ++ I ++ +T + C D D+ H + N+ S A++ + L +
Sbjct: 417 TKENMMIYNNQETKINDFCRDDDQCHHEGYSPSNSKNAGTPSCSNAMAASTKCFPLLEGE 476
Query: 52 DSILLWIAYGLSE 14
LW YGL +
Sbjct: 477 GDQNLWEGYGLKQ 489
>At2g32270.1 68415.m03944 zinc transporter (ZIP3) identical to zinc
transporter [Arabidopsis thaliana]
gi|3252870|gb|AAC24199; member of the Zinc (Zn2+)-Iron
(Fe2+) permease (ZIP) family, PMID:11500563
Length = 339
Score = 25.4 bits (53), Expect = 7.1
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = -3
Query: 178 CKCSDSDEHNSSPHTRKSNSMAFSTV 101
C+CS D+H + RK A TV
Sbjct: 36 CECSHEDDHENKAGARKYKIAAIPTV 61
>At1g34480.1 68414.m04285 DC1 domain-containing protein contains
Pfam protein PF03107 DC1 domain
Length = 602
Score = 25.4 bits (53), Expect = 7.1
Identities = 8/22 (36%), Positives = 15/22 (68%)
Frame = +1
Query: 127 TFWYVGNCCARHYQNICKRKVY 192
TF Y + + H+ ++C+RK+Y
Sbjct: 484 TFSYEQDASSEHWCDVCERKIY 505
>At3g21220.1 68416.m02682 mitogen-activated protein kinase kinase
(MAPKK), putative (MKK5) identical to GB:BAA28831 from
[Arabidopsis thaliana]; mitogen-activated protein kinase
kinase (MAPKK) family, PMID:12119167
Length = 348
Score = 25.0 bits (52), Expect = 9.4
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -3
Query: 214 ISIVSSVDTPFSCKCSDSDEHN 149
I I+ SVD P KC D +HN
Sbjct: 117 IEILRSVDHPNVVKCHDMFDHN 138
>At3g17611.2 68416.m02250 rhomboid family protein / zinc finger
protein-related contains Pfam profiles PF01694: Rhomboid
family, PF00641: Zn-finger in Ran binding protein and
others
Length = 239
Score = 25.0 bits (52), Expect = 9.4
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = -1
Query: 291 YGQLIPNHHASNNPVVLVQETSPDTLFL*YL 199
YG L+P +A+ ++LVQ P+ FL +L
Sbjct: 82 YGILVPTKYAAWAELILVQMFVPNASFLGHL 112
>At3g17611.1 68416.m02249 rhomboid family protein / zinc finger
protein-related contains Pfam profiles PF01694: Rhomboid
family, PF00641: Zn-finger in Ran binding protein and
others
Length = 334
Score = 25.0 bits (52), Expect = 9.4
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = -1
Query: 291 YGQLIPNHHASNNPVVLVQETSPDTLFL*YL 199
YG L+P +A+ ++LVQ P+ FL +L
Sbjct: 177 YGILVPTKYAAWAELILVQMFVPNASFLGHL 207
>At3g08760.1 68416.m01018 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 557
Score = 25.0 bits (52), Expect = 9.4
Identities = 14/47 (29%), Positives = 20/47 (42%)
Frame = -3
Query: 196 VDTPFSCKCSDSDEHNSSPHTRKSNSMAFSTVGAVSFNNALIKELSS 56
VD FS K S +P T SNS A + + + L+ S+
Sbjct: 318 VDKDFSAKLSGYGCAGHAPETETSNSSALANLSVETLERGLLTPKSN 364
>At2g40620.1 68415.m05010 bZIP transcription factor family protein
identical to b-Zip DNA binding protein GI:2246376 from
[Arabidopsis thaliana]; contains a bZIP transcription
factor basic domain signature (PDOC00036)
Length = 367
Score = 25.0 bits (52), Expect = 9.4
Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Frame = -3
Query: 256 QSCGVGAGNLTRYSISIVSSVDTPFSCKCSDSDEHNSSPHTRKSNSM-AFSTVGAVSFNN 80
+ G G+G+ + + D PFS + ++ NS P R S S+ ST+ ++
Sbjct: 75 EKLGSGSGSASDSAGPSAPRSDNPFSAENGGAEAGNSRPRHRHSLSVDGSSTLESIEAKK 134
Query: 79 AL 74
A+
Sbjct: 135 AM 136
>At2g01660.2 68415.m00093 33 kDa secretory protein-related contains
Pfam PF01657: Domain of unknown function, duplicated in
33 KDa secretory proteins
Length = 259
Score = 25.0 bits (52), Expect = 9.4
Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
Frame = -3
Query: 202 SSVDTPFSCKCSDSDEHNSSPHTRKSNSMAFSTVGAVS---FNNALIKELSSDDS 47
++VDT CS SP+ NS+ S V + S +NN +S D S
Sbjct: 22 AAVDTFIYGGCSQEKYFPGSPYESNVNSLLTSFVSSASLYTYNNFTTNGISGDSS 76
>At2g01660.1 68415.m00092 33 kDa secretory protein-related contains
Pfam PF01657: Domain of unknown function, duplicated in
33 KDa secretory proteins
Length = 288
Score = 25.0 bits (52), Expect = 9.4
Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
Frame = -3
Query: 202 SSVDTPFSCKCSDSDEHNSSPHTRKSNSMAFSTVGAVS---FNNALIKELSSDDS 47
++VDT CS SP+ NS+ S V + S +NN +S D S
Sbjct: 22 AAVDTFIYGGCSQEKYFPGSPYESNVNSLLTSFVSSASLYTYNNFTTNGISGDSS 76
>At1g02980.1 68414.m00268 cullin family protein similar to cullin 1
[Homo sapiens] GI:3139077; contains Pfam profile
PF00888: Cullin family
Length = 742
Score = 25.0 bits (52), Expect = 9.4
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Frame = -3
Query: 139 HTRKSNSMAFSTVGAVSFNNALIKELSS--DDSILLWI 32
+TR+ + S VG +SF + + +EL S D++L I
Sbjct: 120 YTRRGSHPTLSAVGFISFRDLVYQELQSKAKDAVLALI 157
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,991,079
Number of Sequences: 28952
Number of extensions: 133235
Number of successful extensions: 413
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 410
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 413
length of database: 12,070,560
effective HSP length: 70
effective length of database: 10,043,920
effective search space used: 291273680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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