Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_E12
         (288 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    28   0.023
DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped prot...    20   4.6  
AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.       20   4.6  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       19   8.0  

>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 27.9 bits (59), Expect = 0.023
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -2

Query: 251 AKYTCSFCGKDAMKRSCVGIWSCKRCK 171
           +K+ CS CG  A  +   G++SC+ CK
Sbjct: 82  SKHLCSICGDRASGKH-YGVYSCEGCK 107


>DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped
           protein.
          Length = 126

 Score = 20.2 bits (40), Expect = 4.6
 Identities = 6/13 (46%), Positives = 7/13 (53%)
 Frame = -2

Query: 260 TQHAKYTCSFCGK 222
           T    Y+C  CGK
Sbjct: 103 TDERPYSCDICGK 115


>AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.
          Length = 199

 Score = 20.2 bits (40), Expect = 4.6
 Identities = 5/13 (38%), Positives = 8/13 (61%)
 Frame = +2

Query: 218 HPCRRMSKCISRV 256
           +PCR    C+ R+
Sbjct: 113 NPCRNNGSCVDRI 125


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 19.4 bits (38), Expect = 8.0
 Identities = 5/10 (50%), Positives = 7/10 (70%)
 Frame = -2

Query: 254 HAKYTCSFCG 225
           H  +TC+ CG
Sbjct: 496 HNPFTCNMCG 505


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 52,666
Number of Sequences: 336
Number of extensions: 920
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 48
effective length of database: 106,457
effective search space used:  5003479
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)