Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_E12
         (288 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC800.04c |rpl4301|rpl43-1, rpl43, rpl37a-1|60S ribosomal prot...    89   9e-20
SPBC83.02c |rpl4302|rpl43-2, rpl43, rpl37a-2|60S ribosomal prote...    88   3e-19
SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster ...    26   0.95 
SPBC29A3.05 |||chromatin remodeling complex subunit|Schizosaccha...    26   1.2  
SPAC17D4.04 ||SPAC458.01|tRNA |Schizosaccharomyces pombe|chr 1||...    24   3.8  
SPBC2D10.03c |||DUF866 domain protein|Schizosaccharomyces pombe|...    23   6.7  
SPAC24B11.06c |sty1|spc1, phh1|MAP kinase Sty1|Schizosaccharomyc...    23   6.7  
SPCC126.02c |pku70||Ku domain protein Pku70|Schizosaccharomyces ...    23   6.7  
SPBC1D7.05 |byr2|ste8, SPBC2F12.01|MAP kinase kinase kinase Byr2...    23   8.8  
SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch...    23   8.8  

>SPBC800.04c |rpl4301|rpl43-1, rpl43, rpl37a-1|60S ribosomal protein
           L37a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 94

 Score = 89.4 bits (212), Expect = 9e-20
 Identities = 37/69 (53%), Positives = 52/69 (75%), Gaps = 2/69 (2%)
 Frame = -2

Query: 287 RKMVKKMEVTQHAKYTCSFCGKDAMKRSCVGIWSC--KRCKRTVAGGAWVFSTTAASSCR 114
           R+ V+K+EV QH++Y C FCG++ +KR+  GIW C  K CK+ +AGGAW  +T AA+S R
Sbjct: 23  RRDVRKIEVQQHSRYQCPFCGRNTVKRTAAGIWCCNGKGCKKVLAGGAWTVTTAAATSAR 82

Query: 113 SAVRRLREV 87
           S +RRLRE+
Sbjct: 83  STIRRLREM 91


>SPBC83.02c |rpl4302|rpl43-2, rpl43, rpl37a-2|60S ribosomal protein
           L37a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 94

 Score = 87.8 bits (208), Expect = 3e-19
 Identities = 37/69 (53%), Positives = 51/69 (73%), Gaps = 2/69 (2%)
 Frame = -2

Query: 287 RKMVKKMEVTQHAKYTCSFCGKDAMKRSCVGIWSC--KRCKRTVAGGAWVFSTTAASSCR 114
           R+ V+K+EV QH++Y C FCG+  +KR+  GIW C  K C +T+AGGAW  +T AA+S R
Sbjct: 23  RRDVRKIEVQQHSRYQCPFCGRLTVKRTAAGIWKCSGKGCSKTLAGGAWTVTTAAATSAR 82

Query: 113 SAVRRLREV 87
           S +RRLRE+
Sbjct: 83  STIRRLREM 91


>SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 782

 Score = 26.2 bits (55), Expect = 0.95
 Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = -2

Query: 257 QHAKYT-CSFCGKDAMKRSCVGIWSCKRCKR 168
           +H K T C  C +  +K  C  +W C+ CK+
Sbjct: 15  RHRKITSCRECHR--LKLKCDRVWPCENCKK 43


>SPBC29A3.05 |||chromatin remodeling complex
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 139

 Score = 25.8 bits (54), Expect = 1.2
 Identities = 11/30 (36%), Positives = 13/30 (43%)
 Frame = -2

Query: 248 KYTCSFCGKDAMKRSCVGIWSCKRCKRTVA 159
           KY C  CG     + C  I S  RC +  A
Sbjct: 110 KYACQNCGTSYCSKGCEVIHSETRCMKVYA 139


>SPAC17D4.04 ||SPAC458.01|tRNA |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 654

 Score = 24.2 bits (50), Expect = 3.8
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 166 VLLHRLHDQMPTHERFMASLPQNEQV 243
           +L  +L +Q+PT  R  AS+P   QV
Sbjct: 32  LLKQKLTEQLPTTFRITASIPHATQV 57


>SPBC2D10.03c |||DUF866 domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 157

 Score = 23.4 bits (48), Expect = 6.7
 Identities = 6/10 (60%), Positives = 9/10 (90%)
 Frame = -2

Query: 194 IWSCKRCKRT 165
           IW+CK C++T
Sbjct: 65  IWTCKNCRKT 74


>SPAC24B11.06c |sty1|spc1, phh1|MAP kinase Sty1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 349

 Score = 23.4 bits (48), Expect = 6.7
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = +1

Query: 208 RFMASLPQNEQVYFA 252
           RF+ SLPQ E+V FA
Sbjct: 248 RFVQSLPQKEKVPFA 262


>SPCC126.02c |pku70||Ku domain protein Pku70|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 607

 Score = 23.4 bits (48), Expect = 6.7
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = +1

Query: 205 ERFMASLPQNEQVYFA 252
           ERF  ++PQ++QV FA
Sbjct: 273 ERFAVAVPQSKQVSFA 288


>SPBC1D7.05 |byr2|ste8, SPBC2F12.01|MAP kinase kinase kinase
           Byr2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 659

 Score = 23.0 bits (47), Expect = 8.8
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = +1

Query: 121 DEAAVVENTQAPPATVLLHRLHDQMPTHE 207
           + A   E+ Q PP+ ++  R+ D  P H+
Sbjct: 198 NNAKPFESYQRPPSELINSRISDFFPDHQ 226


>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 642

 Score = 23.0 bits (47), Expect = 8.8
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = +1

Query: 91  SRNLLTADLHDEAAVVEN 144
           SRNL T + +DE ++++N
Sbjct: 603 SRNLSTVNPYDEGSIIKN 620


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 896,468
Number of Sequences: 5004
Number of extensions: 12846
Number of successful extensions: 43
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 67723590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)