Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_E12
(288 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_07_0070 + 27479654-27479672,27479864-27479922,27480339-274803... 93 4e-20
01_06_0260 - 27959188-27959251,27959342-27959424,27960220-279603... 93 4e-20
07_03_0481 - 18572206-18574314,18574591-18575185,18575304-185753... 29 0.80
07_01_0385 - 2871628-2872131 28 1.4
12_02_0648 + 21490202-21490296,21490547-21490634,21491216-214912... 27 1.8
07_03_1237 + 25073010-25073513 27 3.2
06_03_0749 + 24133302-24134274,24134585-24135272,24135751-241358... 27 3.2
05_03_0676 - 16853937-16854042,16854605-16854700,16854920-168550... 25 7.4
03_05_1144 + 30719953-30720456 25 7.4
01_06_0787 - 31999632-32000045,32000128-32000214,32000295-320005... 25 7.4
01_06_0138 + 26865895-26865953,26866628-26867870 25 7.4
12_02_0483 + 19546295-19546397,19547163-19547482,19547606-195486... 25 9.8
11_01_0401 - 3020606-3020932,3021480-3021626,3021711-3021878,302... 25 9.8
03_01_0396 + 3079840-3079946,3080503-3080737,3080826-3080933,308... 25 9.8
>05_07_0070 +
27479654-27479672,27479864-27479922,27480339-27480378,
27480477-27480565,27481065-27481147,27481219-27481282
Length = 117
Score = 92.7 bits (220), Expect = 4e-20
Identities = 39/66 (59%), Positives = 49/66 (74%)
Frame = -2
Query: 287 RKMVKKMEVTQHAKYTCSFCGKDAMKRSCVGIWSCKRCKRTVAGGAWVFSTTAASSCRSA 108
RK +KKMEV+QH+KY C FCGK A+KR VGIW CK C + AGGA+ +T +A + RS
Sbjct: 48 RKQIKKMEVSQHSKYFCEFCGKFAVKRKAVGIWGCKDCGKVKAGGAYTMNTASAVTVRST 107
Query: 107 VRRLRE 90
+RRLRE
Sbjct: 108 IRRLRE 113
>01_06_0260 -
27959188-27959251,27959342-27959424,27960220-27960308,
27960388-27960427,27960938-27960981,27961240-27961288
Length = 122
Score = 92.7 bits (220), Expect = 4e-20
Identities = 39/66 (59%), Positives = 49/66 (74%)
Frame = -2
Query: 287 RKMVKKMEVTQHAKYTCSFCGKDAMKRSCVGIWSCKRCKRTVAGGAWVFSTTAASSCRSA 108
RK +KKMEV+QH+KY C FCGK A+KR VGIW CK C + AGGA+ +T +A + RS
Sbjct: 53 RKQIKKMEVSQHSKYFCEFCGKFAVKRKAVGIWGCKDCGKVKAGGAYTMNTASAVTVRST 112
Query: 107 VRRLRE 90
+RRLRE
Sbjct: 113 IRRLRE 118
>07_03_0481 -
18572206-18574314,18574591-18575185,18575304-18575371,
18577344-18577458,18578179-18578333,18578673-18580621,
18580691-18581372,18581550-18581621,18582558-18583199,
18583301-18583402,18585011-18585100
Length = 2192
Score = 28.7 bits (61), Expect = 0.80
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = -2
Query: 230 CGKDAMKRSCVGIWSCKRCKRTVAGGAWVFSTTAASSCRSAVRRLR 93
C +KR+ G W C RC+ + + A +S R RR+R
Sbjct: 58 CLNPPLKRAPPGNWQCPRCRTKKVSLKLLDNADADTSKRERTRRMR 103
>07_01_0385 - 2871628-2872131
Length = 167
Score = 27.9 bits (59), Expect = 1.4
Identities = 12/33 (36%), Positives = 15/33 (45%)
Frame = -2
Query: 245 YTCSFCGKDAMKRSCVGIWSCKRCKRTVAGGAW 147
+ C FC K K +G K VAGG+W
Sbjct: 47 FPCLFCAKTFRKSQALGGHQNAHRKERVAGGSW 79
>12_02_0648 +
21490202-21490296,21490547-21490634,21491216-21491260,
21491355-21491387,21491480-21491557,21491647-21491690,
21491765-21491805,21492102-21492184,21492261-21492352,
21492468-21492537,21492838-21492876,21493670-21493687,
21494586-21494713,21495235-21495358,21495585-21495716,
21496092-21496223,21496582-21496665
Length = 441
Score = 27.5 bits (58), Expect = 1.8
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = -2
Query: 266 EVTQHAKYTCSFCGKDAM 213
E+ +H KYTC C K A+
Sbjct: 194 EMVEHNKYTCPICSKTAL 211
>07_03_1237 + 25073010-25073513
Length = 167
Score = 26.6 bits (56), Expect = 3.2
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = -2
Query: 212 KRSCVGIWSCKRCKRTVAGGAWVFSTTAASSC 117
KR G+ C C RT++GG++ + ++C
Sbjct: 24 KRGAAGV--CNVCDRTISGGSYGYRCGGGAAC 53
>06_03_0749 +
24133302-24134274,24134585-24135272,24135751-24135857,
24137565-24137815
Length = 672
Score = 26.6 bits (56), Expect = 3.2
Identities = 11/36 (30%), Positives = 17/36 (47%)
Frame = +2
Query: 167 FSCTVYMTRCLHMNVSWHPCRRMSKCISRVELLPSF 274
+ C+V CL V HPC +S S +++ F
Sbjct: 613 YICSVARANCLPSPVPSHPCAHVSLSTSAIQITLQF 648
>05_03_0676 -
16853937-16854042,16854605-16854700,16854920-16855089,
16856742-16856825,16857042-16857119,16858053-16858216,
16858345-16858429
Length = 260
Score = 25.4 bits (53), Expect = 7.4
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = -2
Query: 161 AGGAWVFSTTAASSCRSAVRRLR 93
AG AW S++++SS +A RRL+
Sbjct: 3 AGDAWGRSSSSSSSAAAAARRLQ 25
>03_05_1144 + 30719953-30720456
Length = 167
Score = 25.4 bits (53), Expect = 7.4
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -2
Query: 170 RTVAGGAWVFSTTAASSCRSAVRR 99
R +GG W ++ +SSC S++RR
Sbjct: 144 RFYSGGFWRSPSSGSSSCASSLRR 167
>01_06_0787 -
31999632-32000045,32000128-32000214,32000295-32000584,
32000670-32000844,32000930-32001142,32001227-32001328,
32001418-32001822,32001922-32002134,32002312-32002357,
32002602-32002867,32003936-32004012,32004095-32004170,
32004339-32004418,32004945-32005036,32005132-32005171,
32005301-32005400,32005815-32005962,32006071-32006153,
32006207-32006383
Length = 1027
Score = 25.4 bits (53), Expect = 7.4
Identities = 11/41 (26%), Positives = 19/41 (46%)
Frame = -2
Query: 227 GKDAMKRSCVGIWSCKRCKRTVAGGAWVFSTTAASSCRSAV 105
GKD + +CV ++ + + GG WV + C S +
Sbjct: 880 GKD--RTNCVTAYAARPEEEEERGGKWVLQDVCTNPCESTI 918
>01_06_0138 + 26865895-26865953,26866628-26867870
Length = 433
Score = 25.4 bits (53), Expect = 7.4
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = -1
Query: 237 LILRQGCHETFMCRHLVM*TVQENSSWRSLGI 142
+++R C + M HL+ +++NSSW +L I
Sbjct: 13 VLMRCNCGSS-MLAHLMTDVMEDNSSWTALSI 43
>12_02_0483 +
19546295-19546397,19547163-19547482,19547606-19548611,
19549890-19549985,19550500-19551551
Length = 858
Score = 25.0 bits (52), Expect = 9.8
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = +1
Query: 106 TADLHDEAAVVENTQAPPATVLLHRLHDQMPTHERFMASLPQNE 237
T DL E ++++ P ++ R H++ +H +F S PQ+E
Sbjct: 172 TQDLSPEQ---QDSKTIPMEPIILRSHEEPSSHSQFEESRPQSE 212
>11_01_0401 -
3020606-3020932,3021480-3021626,3021711-3021878,
3021960-3022218,3024469-3024522,3025200-3025375
Length = 376
Score = 25.0 bits (52), Expect = 9.8
Identities = 9/31 (29%), Positives = 14/31 (45%)
Frame = -2
Query: 239 CSFCGKDAMKRSCVGIWSCKRCKRTVAGGAW 147
C + G + ++ CV IW+ R G W
Sbjct: 284 CRYIGPNKLRNFCVDIWNWLRAVPEKLQGKW 314
>03_01_0396 +
3079840-3079946,3080503-3080737,3080826-3080933,
3081009-3081178,3081607-3081740,3081856-3082027,
3082160-3082712,3082836-3082948,3083051-3083294,
3083434-3083652
Length = 684
Score = 25.0 bits (52), Expect = 9.8
Identities = 10/40 (25%), Positives = 21/40 (52%)
Frame = +1
Query: 115 LHDEAAVVENTQAPPATVLLHRLHDQMPTHERFMASLPQN 234
LH ++ + PP++ L+ L+D++P + + L N
Sbjct: 368 LHAAREMLRMSPPPPSSFLVFSLYDELPKGDFVLEQLANN 407
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,277,084
Number of Sequences: 37544
Number of extensions: 96290
Number of successful extensions: 326
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 321
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 326
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 304131700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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