Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_E12
         (288 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56509| Best HMM Match : Ebp2 (HMM E-Value=2.1)                      27   1.9  
SB_7587| Best HMM Match : zf-C2H2 (HMM E-Value=3.5e-13)                27   2.5  
SB_38395| Best HMM Match : TAFII28 (HMM E-Value=2.9)                   27   3.3  
SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.3  
SB_37102| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     26   5.8  
SB_25409| Best HMM Match : PSD1 (HMM E-Value=7.2)                      26   5.8  
SB_24384| Best HMM Match : I-set (HMM E-Value=4.3e-31)                 26   5.8  
SB_19167| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   5.8  
SB_35194| Best HMM Match : EGF_2 (HMM E-Value=0)                       26   5.8  
SB_7335| Best HMM Match : TSP_1 (HMM E-Value=0)                        25   7.7  

>SB_56509| Best HMM Match : Ebp2 (HMM E-Value=2.1)
          Length = 298

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 10/13 (76%), Positives = 11/13 (84%)
 Frame = -2

Query: 242 TCSFCGKDAMKRS 204
           TC+FCGKDA K S
Sbjct: 243 TCNFCGKDARKTS 255


>SB_7587| Best HMM Match : zf-C2H2 (HMM E-Value=3.5e-13)
          Length = 351

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -2

Query: 287 RKMVKKMEVTQHAKYTCSFCGK 222
           +K ++  E++ H KY CS CGK
Sbjct: 214 KKQIQSNEIS-HKKYVCSTCGK 234


>SB_38395| Best HMM Match : TAFII28 (HMM E-Value=2.9)
          Length = 292

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +1

Query: 103 LTADLHDEAAVVENTQAP 156
           +TADLHD A VV N + P
Sbjct: 247 ITADLHDTARVVVNLRTP 264


>SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3486

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +1

Query: 103  LTADLHDEAAVVENTQAP 156
            +TADLHD A VV N + P
Sbjct: 972  ITADLHDTARVVVNLRTP 989


>SB_37102| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 618

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -2

Query: 287 RKMVKKMEVTQHAKYTCSFCGKDAMKRS 204
           R+ VK + + +  KY C  C KD  + S
Sbjct: 410 REQVKDLFIKEGEKYRCRLCSKDFTRLS 437


>SB_25409| Best HMM Match : PSD1 (HMM E-Value=7.2)
          Length = 889

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
 Frame = +1

Query: 115 LHDEAAVV--ENTQAPPATVLLHRLHDQMPTHERFMASLPQNEQVY 246
           LHD AA V   + + P  T+ LH     +PT+ R +   P+    Y
Sbjct: 409 LHDAAASVYTASNEPPEFTIELHHELGYLPTYPRKVTIRPRKVPTY 454


>SB_24384| Best HMM Match : I-set (HMM E-Value=4.3e-31)
          Length = 1399

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 17/47 (36%), Positives = 24/47 (51%)
 Frame = -2

Query: 236  SFCGKDAMKRSCVGIWSCKRCKRTVAGGAWVFSTTAASSCRSAVRRL 96
            S C KDA  ++ VG ++C RCK    G  +       S+CR   +RL
Sbjct: 911  SACHKDAACQNTVGSYAC-RCKEGYEGDGY-------SNCRVEKKRL 949


>SB_19167| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 227

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
 Frame = +1

Query: 88  TSRNLLTADLHDEAAVVENT----QAPPATVLLHRLHDQMPTHER 210
           T++N   A+ H+E     +     Q PPA    H  ++Q PTH R
Sbjct: 109 TNKNHSPAESHEERPWKNHDSLEHQPPPAEENTHHEYNQQPTHVR 153


>SB_35194| Best HMM Match : EGF_2 (HMM E-Value=0)
          Length = 960

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 10/39 (25%), Positives = 17/39 (43%)
 Frame = -2

Query: 233 FCGKDAMKRSCVGIWSCKRCKRTVAGGAWVFSTTAASSC 117
           +C        C+  W+ KRC +    G + F+ T   +C
Sbjct: 594 YCDHVTGSCECLPGWTGKRCDQACPSGTYGFNCTLPCAC 632


>SB_7335| Best HMM Match : TSP_1 (HMM E-Value=0)
          Length = 2681

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 12/54 (22%), Positives = 21/54 (38%)
 Frame = -2

Query: 263  VTQHAKYTCSFCGKDAMKRSCVGIWSCKRCKRTVAGGAWVFSTTAASSCRSAVR 102
            + QH    C + G D  +++C    +   CK   +  +W   +     C   VR
Sbjct: 1224 IPQHGGQLCDYIGPDTERKAC----TFGPCKTDGSWSSWTEWSDCTQECGDGVR 1273


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,047,114
Number of Sequences: 59808
Number of extensions: 112070
Number of successful extensions: 413
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 398
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 413
length of database: 16,821,457
effective HSP length: 70
effective length of database: 12,634,897
effective search space used: 315872425
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)