Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_E12
         (288 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110490-2|CAB54440.1|   91|Caenorhabditis elegans Hypothetical ...   103   2e-23
Z70287-1|CAA94302.3|  294|Caenorhabditis elegans Hypothetical pr...    32   0.057
U53154-3|AAC25852.1|  346|Caenorhabditis elegans Hypothetical pr...    29   0.71 
U41534-3|AAB47595.1| 1119|Caenorhabditis elegans Hypothetical pr...    28   0.93 
Z69790-2|CAA93653.2| 1271|Caenorhabditis elegans Hypothetical pr...    27   2.9  
AF339882-1|AAK14396.1| 1329|Caenorhabditis elegans attractin pro...    27   2.9  
AF039048-9|AAB94233.1|  362|Caenorhabditis elegans Hypothetical ...    27   2.9  
AF039048-8|AAT68896.1|  367|Caenorhabditis elegans Hypothetical ...    27   2.9  
Z72507-1|CAA96633.2|  172|Caenorhabditis elegans Hypothetical pr...    26   3.8  
AF125461-4|AAK18995.1| 1360|Caenorhabditis elegans Hypothetical ...    26   5.0  
U00046-3|AAC47045.2|  244|Caenorhabditis elegans Hypothetical pr...    25   6.6  
Z83221-5|CAB05706.2|  578|Caenorhabditis elegans Hypothetical pr...    25   8.7  
Z75532-3|CAA99810.1|  660|Caenorhabditis elegans Hypothetical pr...    25   8.7  
AF125463-6|AAD12865.1|  301|Caenorhabditis elegans Hypothetical ...    25   8.7  

>AL110490-2|CAB54440.1|   91|Caenorhabditis elegans Hypothetical
           protein Y48B6A.2 protein.
          Length = 91

 Score =  103 bits (248), Expect = 2e-23
 Identities = 41/68 (60%), Positives = 55/68 (80%)
 Frame = -2

Query: 287 RKMVKKMEVTQHAKYTCSFCGKDAMKRSCVGIWSCKRCKRTVAGGAWVFSTTAASSCRSA 108
           RKM KK+EV QH++YTCSFCGK+AMKR   GIW+C +C + VAGGA+V+ T  A++ RS 
Sbjct: 23  RKMAKKLEVAQHSRYTCSFCGKEAMKRKATGIWNCAKCHKVVAGGAYVYGTVTAATVRST 82

Query: 107 VRRLREVK 84
           +RRLR++K
Sbjct: 83  IRRLRDLK 90


>Z70287-1|CAA94302.3|  294|Caenorhabditis elegans Hypothetical
           protein R09E10.1 protein.
          Length = 294

 Score = 32.3 bits (70), Expect = 0.057
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = +2

Query: 200 HMNVSWHPCRRMSKCISRVELLPSF*PFY 286
           ++N   +  RR SKC  RVEL PS+  FY
Sbjct: 261 YVNAKIYASRRNSKCFRRVELFPSYIRFY 289


>U53154-3|AAC25852.1|  346|Caenorhabditis elegans Hypothetical
           protein C33G8.8 protein.
          Length = 346

 Score = 28.7 bits (61), Expect = 0.71
 Identities = 13/21 (61%), Positives = 14/21 (66%), Gaps = 2/21 (9%)
 Frame = +2

Query: 194 CLHMNVSWHPCR--RMSKCIS 250
           CLH   S HPCR  RM KCI+
Sbjct: 42  CLHRLPSSHPCRHCRMEKCIA 62


>U41534-3|AAB47595.1| 1119|Caenorhabditis elegans Hypothetical
           protein C16A3.7 protein.
          Length = 1119

 Score = 28.3 bits (60), Expect = 0.93
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -2

Query: 257 QHAKYTCSFCGKDAMKRSCVGIWSCKRC 174
           ++ KY C+ C      R   G+WSCK C
Sbjct: 229 ENNKYECAICYTRITTRQ--GVWSCKTC 254


>Z69790-2|CAA93653.2| 1271|Caenorhabditis elegans Hypothetical
           protein F33C8.1a protein.
          Length = 1271

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = +2

Query: 212 SWHPCRRMSKCISRVELLPSF 274
           +W+P  + S C+S+ +L P+F
Sbjct: 736 TWYPIDKASPCVSKEDLSPAF 756


>AF339882-1|AAK14396.1| 1329|Caenorhabditis elegans attractin
           protein.
          Length = 1329

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = +2

Query: 212 SWHPCRRMSKCISRVELLPSF 274
           +W+P  + S C+S+ +L P+F
Sbjct: 736 TWYPIDKASPCVSKEDLSPAF 756


>AF039048-9|AAB94233.1|  362|Caenorhabditis elegans Hypothetical
           protein F16B4.2a protein.
          Length = 362

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -2

Query: 212 KRSCVGIWSCKRCKRTVAGGAWVFSTT 132
           K  C+  W+C  C +T+   +W F +T
Sbjct: 333 KEKCILDWTCSTCDKTIE--SWYFRST 357


>AF039048-8|AAT68896.1|  367|Caenorhabditis elegans Hypothetical
           protein F16B4.2b protein.
          Length = 367

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -2

Query: 212 KRSCVGIWSCKRCKRTVAGGAWVFSTT 132
           K  C+  W+C  C +T+   +W F +T
Sbjct: 338 KEKCILDWTCSTCDKTIE--SWYFRST 362


>Z72507-1|CAA96633.2|  172|Caenorhabditis elegans Hypothetical
           protein F17C11.1 protein.
          Length = 172

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = -2

Query: 230 CGKDAMKRSCVGIWSCKRCKRTVAGGAWVFSTTAASSCRS 111
           CGK  + R+C  +    +C        W F+TTAA++  S
Sbjct: 69  CGKSPVNRNCTALVPDSKCV-----FKWAFATTAAATACS 103


>AF125461-4|AAK18995.1| 1360|Caenorhabditis elegans Hypothetical
            protein Y8A9A.2 protein.
          Length = 1360

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = -2

Query: 242  TCSFCGKDAMKRSCVGIWSCKRCKRTVAGGAWVFSTTAASSC 117
            TC  CG++  KR C+ +     C     G A   S  A+S C
Sbjct: 1119 TCGSCGQETRKRKCLSLQYGCAC----TGNATDTSVCASSVC 1156


>U00046-3|AAC47045.2|  244|Caenorhabditis elegans Hypothetical
           protein R13F6.5 protein.
          Length = 244

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +2

Query: 215 WHPCRRMSKCISRVE 259
           WH CRR + C+ R++
Sbjct: 95  WHHCRRCNLCVHRMD 109


>Z83221-5|CAB05706.2|  578|Caenorhabditis elegans Hypothetical
           protein C49A1.9 protein.
          Length = 578

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 5/73 (6%)
 Frame = -2

Query: 287 RKMVKKMEVTQHAKYTCSFCGKDA----MKRSCVGIWSCKRCKRTV-AGGAWVFSTTAAS 123
           R+   ++++    ++T + C K A    MK S     S      TV +   W+F+TT   
Sbjct: 95  RESSTELKIAVKMEFTANTCSKTATANTMKNSVATDTSYLEYTMTVNSESQWIFTTTITL 154

Query: 122 SCRSAVRRLREVK 84
           +C    R  +  K
Sbjct: 155 NCPVGYRLFKRPK 167


>Z75532-3|CAA99810.1|  660|Caenorhabditis elegans Hypothetical
           protein C54G10.3 protein.
          Length = 660

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -2

Query: 236 SFCGKDAMKRSCVGIWSCKRCK 171
           S CGK ++ R   G+W C   K
Sbjct: 459 SGCGKSSLLRMFAGLWHCSSGK 480


>AF125463-6|AAD12865.1|  301|Caenorhabditis elegans Hypothetical
           protein Y49F6C.3 protein.
          Length = 301

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 12/45 (26%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = -2

Query: 224 KDAMKRSCVGIWSCKRCKRTVAGGAWVFSTTAASSCRSAV-RRLR 93
           K A K   +G++ C +  + +  GAW   T    + ++++ +RLR
Sbjct: 38  KIARKNENIGVYLCCQRLKDIGEGAWSVDTEYRLTVKNSIGKRLR 82


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,122,595
Number of Sequences: 27780
Number of extensions: 80902
Number of successful extensions: 276
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 268
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 276
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 269889950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)