Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_E12
         (288 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g60245.1 68416.m06733 60S ribosomal protein L37a (RPL37aC)          91   1e-19
At3g10950.1 68416.m01320 60S ribosomal protein L37a (RPL37aB) si...    90   3e-19
At2g15620.1 68415.m01789 ferredoxin--nitrite reductase, putative...    26   4.8  
At1g77690.1 68414.m09046 amino acid permease, putative similar t...    26   4.8  
At2g46530.2 68415.m05803 transcriptional factor B3 family protei...    25   6.4  
At2g46530.1 68415.m05802 transcriptional factor B3 family protei...    25   6.4  

>At3g60245.1 68416.m06733 60S ribosomal protein L37a (RPL37aC)
          Length = 92

 Score = 91.1 bits (216), Expect = 1e-19
 Identities = 38/66 (57%), Positives = 48/66 (72%)
 Frame = -2

Query: 287 RKMVKKMEVTQHAKYTCSFCGKDAMKRSCVGIWSCKRCKRTVAGGAWVFSTTAASSCRSA 108
           RK +KKMEV+QH+KY C FCGK  +KR  VGIW CK C +  AGGA+  +T +A + RS 
Sbjct: 23  RKQIKKMEVSQHSKYFCEFCGKYGVKRKAVGIWGCKDCGKVKAGGAYTMNTASAVTVRST 82

Query: 107 VRRLRE 90
           +RRLRE
Sbjct: 83  IRRLRE 88


>At3g10950.1 68416.m01320 60S ribosomal protein L37a (RPL37aB)
           similar to putative 60S ribosomal protein L37a
           GB:AAD28753 [Gossypium hirsutum]
          Length = 92

 Score = 89.8 bits (213), Expect = 3e-19
 Identities = 38/66 (57%), Positives = 48/66 (72%)
 Frame = -2

Query: 287 RKMVKKMEVTQHAKYTCSFCGKDAMKRSCVGIWSCKRCKRTVAGGAWVFSTTAASSCRSA 108
           RK +KKMEV+QH KY C FCGK ++KR  VGIW CK C +  AGGA+  +T +A + RS 
Sbjct: 23  RKQIKKMEVSQHNKYFCEFCGKYSVKRKVVGIWGCKDCGKVKAGGAYTMNTASAVTVRST 82

Query: 107 VRRLRE 90
           +RRLRE
Sbjct: 83  IRRLRE 88


>At2g15620.1 68415.m01789 ferredoxin--nitrite reductase, putative
           strong similarity to ferredoxin--nitrite reductase
           [Nicotiana tabacum] GI:19893; contains Pfam profiles
           PF03460: Nitrite/Sulfite reductase ferredoxin-like half
           domain, PF01077: Nitrite and sulphite reductase 4Fe-4S
           domain
          Length = 586

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 10/37 (27%), Positives = 19/37 (51%)
 Frame = -2

Query: 197 GIWSCKRCKRTVAGGAWVFSTTAASSCRSAVRRLREV 87
           G +S KRC+  +   AWV +      C++ +   R++
Sbjct: 286 GFFSPKRCEEAIPLDAWVPADDVLPLCKAVLEAYRDL 322


>At1g77690.1 68414.m09046 amino acid permease, putative similar to
           AUX1 (regulator of root gravitropism, putative permease)
           GI:1531758 GB:CAA67308 from [Arabidopsis thaliana];
           contains Pfam profile PF01490: Transmembrane amino acid
           transporter protein
          Length = 470

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 7/14 (50%), Positives = 13/14 (92%)
 Frame = -1

Query: 159 WRSLGILNNCSFIM 118
           WR+LG++ NC+F++
Sbjct: 132 WRNLGLIFNCTFLL 145


>At2g46530.2 68415.m05803 transcriptional factor B3 family protein /
           auxin-responsive factor AUX/IAA-related contains Pfam
           profiles: PF02309 AUX/IAA family, PF02362 B3 DNA binding
           domain
          Length = 514

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = -2

Query: 173 KRTVAGGAWVFSTTAASSCRSAVRRLREVK*TL 75
           KR VAG A+VF        R  VRRL + + T+
Sbjct: 113 KRLVAGDAFVFLRGETGDLRVGVRRLAKQQSTM 145


>At2g46530.1 68415.m05802 transcriptional factor B3 family protein /
           auxin-responsive factor AUX/IAA-related contains Pfam
           profiles: PF02309 AUX/IAA family, PF02362 B3 DNA binding
           domain
          Length = 601

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = -2

Query: 173 KRTVAGGAWVFSTTAASSCRSAVRRLREVK*TL 75
           KR VAG A+VF        R  VRRL + + T+
Sbjct: 200 KRLVAGDAFVFLRGETGDLRVGVRRLAKQQSTM 232


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,868,924
Number of Sequences: 28952
Number of extensions: 72006
Number of successful extensions: 291
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 288
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 291
length of database: 12,070,560
effective HSP length: 69
effective length of database: 10,072,872
effective search space used: 261894672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)