Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_E11
         (459 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.09 |rps20||40S ribosomal protein S20|Schizosaccharomyces...   185   3e-48
SPBC211.01 |rsm10|SPBC23E6.11|mitochondrial ribosomal protein su...    29   0.34 
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    28   0.60 
SPBC649.05 |cut12|stf1|spindle pole body protein Cut12 |Schizosa...    27   1.4  
SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr 2|...    27   1.8  
SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    26   3.2  
SPAP27G11.12 |||human down-regulated in multiple cancers-1 homol...    25   7.3  
SPBP8B7.18c |||phosphomethylpyrimidine kinase|Schizosaccharomyce...    25   7.3  
SPBC31F10.10c |||zf-MYND type zinc finger protein|Schizosaccharo...    25   7.3  
SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces pombe...    24   9.7  
SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces...    24   9.7  
SPCC550.07 |||acetamidase |Schizosaccharomyces pombe|chr 3|||Manual    24   9.7  

>SPCC576.09 |rps20||40S ribosomal protein S20|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 118

 Score =  185 bits (450), Expect = 3e-48
 Identities = 87/110 (79%), Positives = 101/110 (91%)
 Frame = +2

Query: 110 EKPQAEISPIHRIRITLTSRNVRSLEKVCSDLINGAKKQKLRVKGPVRMPTKVLRITTRK 289
           +K Q   S +HRIRITLTSRNVR+LEKVCSDL+N AK ++LRVKGPVR+PTK+L+ITTRK
Sbjct: 8   QKEQQIPSTVHRIRITLTSRNVRNLEKVCSDLVNRAKDKQLRVKGPVRLPTKILKITTRK 67

Query: 290 TPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSINIEPGVEVEVTIA 439
           TP GEGSKTW+ ++MRIHKR+IDLHSPSEIVKQITSI+IEPGVEVEVTIA
Sbjct: 68  TPNGEGSKTWETYEMRIHKRLIDLHSPSEIVKQITSIHIEPGVEVEVTIA 117


>SPBC211.01 |rsm10|SPBC23E6.11|mitochondrial ribosomal protein
           subunit S10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 224

 Score = 29.1 bits (62), Expect = 0.34
 Identities = 16/51 (31%), Positives = 28/51 (54%)
 Frame = +2

Query: 227 KLRVKGPVRMPTKVLRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEI 379
           K+ +KGP  +P KV   T  ++P    S + + F+   H R+I L+S + +
Sbjct: 92  KIPIKGPRPLPNKVESWTLLRSPFIHKS-SQENFERITHSRLIQLYSVNPV 141


>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
            subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 28.3 bits (60), Expect = 0.60
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = +2

Query: 92   VSGKDIEKPQAEISPIHRIRITLTSRNVRSLEKVCSDLINGAKKQKLRVK 241
            +S   IEKP+A  SPIH       +  +R L+ V      GA++ +  VK
Sbjct: 891  LSSSLIEKPRASSSPIHH----ANNNGLRLLKDVLKKTYRGARENRSSVK 936


>SPBC649.05 |cut12|stf1|spindle pole body protein Cut12
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 548

 Score = 27.1 bits (57), Expect = 1.4
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +2

Query: 83  AAVVSGKDIEKPQAEISPIHRIRITLTSRNVRS 181
           A V +  D+EKPQ +++   R+   L S N R+
Sbjct: 491 ANVTTSADVEKPQVKVATSSRVDYDLKSPNQRT 523


>SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 997

 Score = 26.6 bits (56), Expect = 1.8
 Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
 Frame = +2

Query: 227 KLRVKGPVRMPTKV---LRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITS 397
           K R  G +  P  V   LR    KT  G G    +    ++  R+ DLH   E   +I +
Sbjct: 785 KSRENGTIPRPLYVISHLRPLLHKTSLGVGDILLE-VNGKMITRLSDLHE-FETESEIKA 842

Query: 398 INIEPGVEVEVTI 436
           + +  G+E+E+TI
Sbjct: 843 VILRDGIEMEITI 855


>SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 841

 Score = 25.8 bits (54), Expect = 3.2
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = +2

Query: 332 MRIHKRVIDLHSPSEIVKQITSINIEPGV 418
           +R+H+R I L + S+ ++   + NIE G+
Sbjct: 406 LRVHERAIKLRTLSDSIRADVAENIEMGI 434


>SPAP27G11.12 |||human down-regulated in multiple cancers-1 homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 797

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -3

Query: 292 CFTCCDAENLGRHSDWTLYTEF 227
           C+ C  A+NL  HS  +L+  F
Sbjct: 469 CYLCLYAQNLNSHSSQSLFELF 490


>SPBP8B7.18c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 551

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -3

Query: 343 VDAHLESVPSLGTLTARCFTCCDAENLG 260
           + A L+++ SLG       TC  AEN G
Sbjct: 52  IQADLKTMTSLGVYGMSAITCLVAENAG 79


>SPBC31F10.10c |||zf-MYND type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 574

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +2

Query: 284 RKTPCGEGSKTWDRFQM 334
           R +P   GSKTW+ FQ+
Sbjct: 427 RMSPLRSGSKTWNIFQL 443


>SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 871

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +2

Query: 353 IDLHSPSEIVKQITSINIEPGVEVEVT 433
           ID  SPS I  ++ S N+E G    VT
Sbjct: 545 IDGESPSSISSRLPSSNLEQGSSSSVT 571


>SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 637

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = +3

Query: 42  KVVYLDRNIATTWQPLSCQERISRSPRLRSH 134
           K +Y D   ++   P   Q R+ ++P +R+H
Sbjct: 322 KNLYTDNKDSSLVSPTGLQSRMEQNPEVRAH 352


>SPCC550.07 |||acetamidase |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 533

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 8/25 (32%), Positives = 12/25 (48%)
 Frame = -1

Query: 306 PSPQGVLRVVMRRTLVGIRTGPFTR 232
           P PQ ++ +     L G+   PF R
Sbjct: 176 PQPQAIMHLETSSNLTGVTVNPFNR 200


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,007,265
Number of Sequences: 5004
Number of extensions: 40416
Number of successful extensions: 101
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 172312850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)