Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_E11
(459 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_02_0040 + 4482853-4482988,4483111-4483224,4485372-4485514 171 2e-43
03_02_0370 + 7853646-7853772,7854508-7854621,7855152-7855294 170 4e-43
06_01_0239 - 1819316-1819458,1820578-1820691,1820794-1820923 169 7e-43
03_02_0020 - 5045900-5046211,5046233-5046290,5046604-5047242,504... 54 7e-08
06_01_0379 - 2723365-2723490,2724558-2724647,2724813-2725046,272... 30 1.0
01_05_0790 + 25253363-25254136,25259037-25259897 28 3.1
07_01_0344 - 2490700-2493249 27 5.5
01_06_1839 - 40245862-40246022,40246872-40246977,40247868-402479... 27 5.5
02_05_0551 + 29907768-29907909,29907995-29909280 27 9.6
>10_02_0040 + 4482853-4482988,4483111-4483224,4485372-4485514
Length = 130
Score = 171 bits (416), Expect = 2e-43
Identities = 80/121 (66%), Positives = 99/121 (81%)
Frame = +2
Query: 80 AAAVVSGKDIEKPQAEISPIHRIRITLTSRNVRSLEKVCSDLINGAKKQKLRVKGPVRMP 259
A + G + +A ++RIRITL+S+NV++LEKVC+DL+ GAK ++LRVKGPVR+P
Sbjct: 9 AGGAMKGGKLGMEEARELQLNRIRITLSSKNVKNLEKVCADLVKGAKDKQLRVKGPVRIP 68
Query: 260 TKVLRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSINIEPGVEVEVTIA 439
TKVL ITTRK+PCGEG+ TWDRF+ RIHKRVIDL S ++VKQITSI IEPGVEVEVTIA
Sbjct: 69 TKVLHITTRKSPCGEGTNTWDRFEFRIHKRVIDLISSPDVVKQITSITIEPGVEVEVTIA 128
Query: 440 D 442
D
Sbjct: 129 D 129
>03_02_0370 + 7853646-7853772,7854508-7854621,7855152-7855294
Length = 127
Score = 170 bits (414), Expect = 4e-43
Identities = 84/126 (66%), Positives = 102/126 (80%), Gaps = 4/126 (3%)
Frame = +2
Query: 77 MAAAVV----SGKDIEKPQAEISPIHRIRITLTSRNVRSLEKVCSDLINGAKKQKLRVKG 244
MAAA V G + +A ++RIRITL+S+NV++LEKVC+DL+ GAK ++LRVKG
Sbjct: 1 MAAAAVYGGMKGGKLGVEEAHELQLNRIRITLSSKNVKNLEKVCADLVKGAKDKQLRVKG 60
Query: 245 PVRMPTKVLRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSINIEPGVEV 424
PVR+PTKVL ITTRK+PCGEG+ TWDRF+ RIHKRVIDL S ++VKQITSI IEPGVEV
Sbjct: 61 PVRIPTKVLHITTRKSPCGEGTNTWDRFEFRIHKRVIDLISSPDVVKQITSITIEPGVEV 120
Query: 425 EVTIAD 442
EVTIAD
Sbjct: 121 EVTIAD 126
>06_01_0239 - 1819316-1819458,1820578-1820691,1820794-1820923
Length = 128
Score = 169 bits (412), Expect = 7e-43
Identities = 76/101 (75%), Positives = 92/101 (91%)
Frame = +2
Query: 140 HRIRITLTSRNVRSLEKVCSDLINGAKKQKLRVKGPVRMPTKVLRITTRKTPCGEGSKTW 319
HRIRITL+S++V++LEKVC DL+ GAK + L+VKGPVRMPTKVL ITTRK+PCGEG+ TW
Sbjct: 27 HRIRITLSSKSVKNLEKVCGDLVKGAKDKSLKVKGPVRMPTKVLHITTRKSPCGEGTNTW 86
Query: 320 DRFQMRIHKRVIDLHSPSEIVKQITSINIEPGVEVEVTIAD 442
DRF+MR+HKRVIDL S +++VKQITSI IEPGVEVEVTI+D
Sbjct: 87 DRFEMRVHKRVIDLVSSADVVKQITSITIEPGVEVEVTISD 127
>03_02_0020 -
5045900-5046211,5046233-5046290,5046604-5047242,
5048475-5048515,5048672-5048728,5048952-5049140
Length = 431
Score = 53.6 bits (123), Expect = 7e-08
Identities = 31/104 (29%), Positives = 53/104 (50%), Gaps = 1/104 (0%)
Frame = +2
Query: 128 ISPIHRIRITLTSRNVRSLEKVCSDLINGAKKQKLRVKGPVRMPTKVLRITTRKTPCGEG 307
++P +IRI L S V +E C +I AK + GPV +PTK +P
Sbjct: 329 LAPKQKIRIKLRSYWVPLIEDSCKKIIEAAKTTNAKTMGPVPLPTKRRVYCVLNSPHVHK 388
Query: 308 SKTWDRFQMRIHKRVIDLHSP-SEIVKQITSINIEPGVEVEVTI 436
+ F++R H+R+ID+ P ++ + + + + GV+VEV +
Sbjct: 389 DSRF-HFEIRTHQRLIDIMYPTAQTIDSLMQLQLPAGVDVEVKL 431
>06_01_0379 -
2723365-2723490,2724558-2724647,2724813-2725046,
2725174-2725470
Length = 248
Score = 29.9 bits (64), Expect = 1.0
Identities = 11/33 (33%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = -2
Query: 326 ICPKSWNPHRKVFYV-L*CGEPWSAFGLDPLHG 231
+CP W+ HR+ F++ + C P++ G L+G
Sbjct: 183 VCPAYWSAHRRWFFMSMICLNPFTCIGRSKLNG 215
>01_05_0790 + 25253363-25254136,25259037-25259897
Length = 544
Score = 28.3 bits (60), Expect = 3.1
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +3
Query: 255 CRPRFSASQHVKHLAVRVPRLGTDSRCASTSV 350
C P SA+ +KH A++ LGTD+ A +V
Sbjct: 211 CGPGGSAAPALKHKALQAEALGTDNAMADVAV 242
>07_01_0344 - 2490700-2493249
Length = 849
Score = 27.5 bits (58), Expect = 5.5
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -1
Query: 144 RWIGEISAWGFSISFPDTTAAA 79
RWIG+ S F++S P T A A
Sbjct: 46 RWIGDSSPKNFTLSLPGTVATA 67
>01_06_1839 -
40245862-40246022,40246872-40246977,40247868-40247949,
40248337-40248437,40248531-40248568,40248624-40248675
Length = 179
Score = 27.5 bits (58), Expect = 5.5
Identities = 19/54 (35%), Positives = 27/54 (50%)
Frame = -1
Query: 213 PLMRSEQTFSSERTLRDVSVILIRWIGEISAWGFSISFPDTTAAAMLLRYSGRD 52
P++ SE +S E+ R V G++ AWG + FP T A A R S R+
Sbjct: 25 PMLNSELHYSQEKNKRKV--------GDVPAWGKPLKFP-TGAEAETDRVSTRE 69
>02_05_0551 + 29907768-29907909,29907995-29909280
Length = 475
Score = 26.6 bits (56), Expect = 9.6
Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
Frame = +2
Query: 179 SLEKVCSDLINGAKKQKLRVKG--PVRMPTKVLRITTRKTPCGEGSK 313
++ C+D + G LRV P + VLR+T R PC K
Sbjct: 35 AVSSTCADELPGRDWDSLRVSAASPRNGTSAVLRLTHRHGPCAPAGK 81
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,934,260
Number of Sequences: 37544
Number of extensions: 300345
Number of successful extensions: 817
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 794
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 816
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 907440304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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