Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_E11
         (459 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55959| Best HMM Match : No HMM Matches (HMM E-Value=.)             165   2e-41
SB_29195| Best HMM Match : No HMM Matches (HMM E-Value=.)              37   0.009
SB_36010| Best HMM Match : Remorin_C (HMM E-Value=6.1)                 37   0.009
SB_43824| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.1  
SB_11738| Best HMM Match : SH3_2 (HMM E-Value=3.7e-32)                 29   1.4  
SB_17138| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.3  
SB_25218| Best HMM Match : zf-AD (HMM E-Value=0.094)                   27   5.6  
SB_37931| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.6  
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.5  
SB_20518| Best HMM Match : Alpha-2-MRAP_N (HMM E-Value=7.4)            27   7.5  
SB_42811| Best HMM Match : SRCR (HMM E-Value=0)                        27   9.9  
SB_40712| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  

>SB_55959| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 100

 Score =  165 bits (401), Expect = 2e-41
 Identities = 78/95 (82%), Positives = 88/95 (92%), Gaps = 2/95 (2%)
 Frame = +2

Query: 167 RNVRSLEKV--CSDLINGAKKQKLRVKGPVRMPTKVLRITTRKTPCGEGSKTWDRFQMRI 340
           + VR+  KV  C+DLI GAK++KL+VKGPVRMPTK LRITTRKTPCGEGSKTWDR++MRI
Sbjct: 6   KKVRTTRKVTVCADLIRGAKEKKLKVKGPVRMPTKFLRITTRKTPCGEGSKTWDRYEMRI 65

Query: 341 HKRVIDLHSPSEIVKQITSINIEPGVEVEVTIADA 445
           HKR+IDLHSPSEIVKQITSI+IEPGVEVEVTIADA
Sbjct: 66  HKRLIDLHSPSEIVKQITSISIEPGVEVEVTIADA 100


>SB_29195| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 539

 Score = 36.7 bits (81), Expect = 0.009
 Identities = 32/102 (31%), Positives = 47/102 (46%), Gaps = 1/102 (0%)
 Frame = +3

Query: 45  VVYLDRNIATTWQPLSCQERISRSPRLRSHRSIVSGSR*R-HAMYAHWRRSALTSSMEPR 221
           VV ++  +    +P  C  R+S +P   S RS   GS  R     +H RRS+    +E R
Sbjct: 335 VVNVESALPLITRPSHCSSRVSPAPSNTSRRSSSRGSVPRPRRSTSHDRRSSSRDRLEMR 394

Query: 222 NKNSV*RVQSECRPRFSASQHVKHLAVRVPRLGTDSRCASTS 347
           ++ S  R + + R R SAS+       R+P  G   R  S S
Sbjct: 395 DRRSASRDRLQMRNRRSASRD------RIPSSGGRRRSPSPS 430


>SB_36010| Best HMM Match : Remorin_C (HMM E-Value=6.1)
          Length = 183

 Score = 36.7 bits (81), Expect = 0.009
 Identities = 32/102 (31%), Positives = 47/102 (46%), Gaps = 1/102 (0%)
 Frame = +3

Query: 45  VVYLDRNIATTWQPLSCQERISRSPRLRSHRSIVSGSR*R-HAMYAHWRRSALTSSMEPR 221
           VV ++  +    +P  C  R+S +P   S RS   GS  R     +H RRS+    +E R
Sbjct: 75  VVNVESALPLITRPSHCSSRVSPAPSNTSRRSSSRGSVPRPRRSTSHDRRSSSRDRLEMR 134

Query: 222 NKNSV*RVQSECRPRFSASQHVKHLAVRVPRLGTDSRCASTS 347
           ++ S  R + + R R SAS+       R+P  G   R  S S
Sbjct: 135 DRRSASRDRLQMRNRRSASRD------RIPSSGGRRRSPSPS 170


>SB_43824| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 119

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 28/83 (33%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
 Frame = +3

Query: 102 RISRSPRLRSHRSIVSGSR*R-HAMYAHWRRSALTSSMEPRNKNSV*RVQSECRPRFSAS 278
           R+S +P   S RS   GS  R     +H RRS+    +E R++ S  R + + R R SAS
Sbjct: 3   RVSPAPSNTSRRSSSRGSVPRPRRSTSHDRRSSSRDRLEMRDRRSASRDRLQMRNRRSAS 62

Query: 279 QHVKHLAVRVPRLGTDSRCASTS 347
           +       R+P  G   R  S S
Sbjct: 63  RD------RIPSSGGRRRSPSPS 79


>SB_11738| Best HMM Match : SH3_2 (HMM E-Value=3.7e-32)
          Length = 2436

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +2

Query: 101 KDIEKPQAEISPIHRIRITLTSRNVRSLEKVC 196
           + + K Q E + IH + +T   ++VRSLE+ C
Sbjct: 663 RQLHKIQEESTRIHHLAVTALEKDVRSLEQRC 694


>SB_17138| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 490

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 27/104 (25%), Positives = 46/104 (44%), Gaps = 1/104 (0%)
 Frame = +2

Query: 95  SGKDIEKPQAEISPIHRIRITLTSR-NVRSLEKVCSDLINGAKKQKLRVKGPVRMPTKVL 271
           S +  +K   ++SP+ RI+   TSR ++ S     +DL +   K K   K P+  P    
Sbjct: 124 STRSSKKDPDKVSPLSRIKSPATSRVSLDSDSDDGNDLPSVFTKTKPVWKPPITTPQVNS 183

Query: 272 RITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSIN 403
                  P    + + D  ++R HKR+ D +S      ++ S N
Sbjct: 184 DSEEEDLPSYLSTNSQDT-KIRTHKRIADNNSKISCRSKVDSQN 226


>SB_25218| Best HMM Match : zf-AD (HMM E-Value=0.094)
          Length = 436

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +3

Query: 42  KVVYLDRNIATTWQPLSCQERISRSPRLRSH 134
           +V +  +++  +WQP  C   ISR   + SH
Sbjct: 277 RVTFEQKSLRKSWQPNMCLHDISRDTHVTSH 307


>SB_37931| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 361

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 15/46 (32%), Positives = 26/46 (56%)
 Frame = +2

Query: 53  SRPEYRNNMAAAVVSGKDIEKPQAEISPIHRIRITLTSRNVRSLEK 190
           ++P    N A+ ++S   + +PQA I P+H   I + SRN  ++ K
Sbjct: 301 NQPAMTLNSASVILS---LAEPQAGILPVHPHSIEIASRNRDAIAK 343


>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2670

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 41   ESCLSRPEYRNNMAAAVVSGKDIEKP 118
            +SC   P   +++ AA VSG  +EKP
Sbjct: 1115 KSCAQLPRVMDHVGAACVSGTSMEKP 1140


>SB_20518| Best HMM Match : Alpha-2-MRAP_N (HMM E-Value=7.4)
          Length = 494

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 6/39 (15%)
 Frame = +1

Query: 76  HGSRCRVRKGYREAPG*DL------TDPSYQDHADVTQC 174
           HGSRC V+ G + +   D        D + + H DVT C
Sbjct: 438 HGSRCNVKDGSKSSSSHDKCNRSQEADSTPEPHLDVTDC 476


>SB_42811| Best HMM Match : SRCR (HMM E-Value=0)
          Length = 854

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -1

Query: 99  PDTTAAAMLLRYSGRDKQLSNQKLLSAEPESS 4
           P   A  +   Y+ RD  L NQ+LLS + + +
Sbjct: 215 PSNAACLVFYFYTSRDTSLDNQRLLSIDGQQA 246


>SB_40712| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 93

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = +2

Query: 251 RMPTKVLRITT-RKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEI 379
           R+PT    + T +K PC     TW R +    KR + +H P+ +
Sbjct: 22  RVPTAFPSVATGKKYPCQRKKVTWSR-KKNPFKRRVPVHVPTSL 64


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,024,865
Number of Sequences: 59808
Number of extensions: 339866
Number of successful extensions: 927
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 902
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 927
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 932979724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)