Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_E11
         (459 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L06498-1|AAA60286.1|  119|Homo sapiens ribosomal protein S20 pro...   198   6e-51
BC087850-1|AAH87850.1|  119|Homo sapiens ribosomal protein S20 p...   198   6e-51
BC007507-1|AAH07507.1|  119|Homo sapiens ribosomal protein S20 p...   198   6e-51
AB061842-1|BAB79480.1|  119|Homo sapiens ribosomal protein S20 p...   198   6e-51
AB007156-1|BAA25820.1|   60|Homo sapiens ribosomal protein S20 p...   126   4e-29
M16276-1|AAA59823.1|  269|Homo sapiens HLA-DRB2 protein.               29   7.7  
AY663414-1|AAU88032.1|  261|Homo sapiens MHC class II antigen pr...    29   7.7  
AY375869-1|AAQ88043.1|  234|Homo sapiens MHC class II antigen pr...    29   7.7  
AY375868-1|AAQ88042.1|  234|Homo sapiens MHC class II antigen pr...    29   7.7  
AF000447-1|AAB86436.1|  255|Homo sapiens MHC class II HLA-DQB1 p...    29   7.7  

>L06498-1|AAA60286.1|  119|Homo sapiens ribosomal protein S20
           protein.
          Length = 119

 Score =  198 bits (484), Expect = 6e-51
 Identities = 97/116 (83%), Positives = 104/116 (89%), Gaps = 1/116 (0%)
 Frame = +2

Query: 101 KDIEKPQAEIS-PIHRIRITLTSRNVRSLEKVCSDLINGAKKQKLRVKGPVRMPTKVLRI 277
           KD  K   E    IHRIRITLTSRNV+SLEKVC+DLI GAK++ L+VKGPVRMPTK LRI
Sbjct: 4   KDTGKTPVEPEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRI 63

Query: 278 TTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSINIEPGVEVEVTIADA 445
           TTRKTPCGEGSKTWDRFQMRIHKR+IDLHSPSEIVKQITSI+IEPGVEVEVTIADA
Sbjct: 64  TTRKTPCGEGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVTIADA 119


>BC087850-1|AAH87850.1|  119|Homo sapiens ribosomal protein S20
           protein.
          Length = 119

 Score =  198 bits (484), Expect = 6e-51
 Identities = 97/116 (83%), Positives = 104/116 (89%), Gaps = 1/116 (0%)
 Frame = +2

Query: 101 KDIEKPQAEIS-PIHRIRITLTSRNVRSLEKVCSDLINGAKKQKLRVKGPVRMPTKVLRI 277
           KD  K   E    IHRIRITLTSRNV+SLEKVC+DLI GAK++ L+VKGPVRMPTK LRI
Sbjct: 4   KDTGKTPVEPEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRI 63

Query: 278 TTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSINIEPGVEVEVTIADA 445
           TTRKTPCGEGSKTWDRFQMRIHKR+IDLHSPSEIVKQITSI+IEPGVEVEVTIADA
Sbjct: 64  TTRKTPCGEGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVTIADA 119


>BC007507-1|AAH07507.1|  119|Homo sapiens ribosomal protein S20
           protein.
          Length = 119

 Score =  198 bits (484), Expect = 6e-51
 Identities = 97/116 (83%), Positives = 104/116 (89%), Gaps = 1/116 (0%)
 Frame = +2

Query: 101 KDIEKPQAEIS-PIHRIRITLTSRNVRSLEKVCSDLINGAKKQKLRVKGPVRMPTKVLRI 277
           KD  K   E    IHRIRITLTSRNV+SLEKVC+DLI GAK++ L+VKGPVRMPTK LRI
Sbjct: 4   KDTGKTPVEPEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRI 63

Query: 278 TTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSINIEPGVEVEVTIADA 445
           TTRKTPCGEGSKTWDRFQMRIHKR+IDLHSPSEIVKQITSI+IEPGVEVEVTIADA
Sbjct: 64  TTRKTPCGEGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVTIADA 119


>AB061842-1|BAB79480.1|  119|Homo sapiens ribosomal protein S20
           protein.
          Length = 119

 Score =  198 bits (484), Expect = 6e-51
 Identities = 97/116 (83%), Positives = 104/116 (89%), Gaps = 1/116 (0%)
 Frame = +2

Query: 101 KDIEKPQAEIS-PIHRIRITLTSRNVRSLEKVCSDLINGAKKQKLRVKGPVRMPTKVLRI 277
           KD  K   E    IHRIRITLTSRNV+SLEKVC+DLI GAK++ L+VKGPVRMPTK LRI
Sbjct: 4   KDTGKTPVEPEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRI 63

Query: 278 TTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSINIEPGVEVEVTIADA 445
           TTRKTPCGEGSKTWDRFQMRIHKR+IDLHSPSEIVKQITSI+IEPGVEVEVTIADA
Sbjct: 64  TTRKTPCGEGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVTIADA 119


>AB007156-1|BAA25820.1|   60|Homo sapiens ribosomal protein S20
           protein.
          Length = 60

 Score =  126 bits (304), Expect = 4e-29
 Identities = 57/60 (95%), Positives = 59/60 (98%)
 Frame = +2

Query: 239 KGPVRMPTKVLRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSINIEPGV 418
           KGPVRMPTK LRITTRKTPCGEGSKTWDRFQMRIHKR+IDLHSPSEIVKQITSI+IEPGV
Sbjct: 1   KGPVRMPTKTLRITTRKTPCGEGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGV 60


>M16276-1|AAA59823.1|  269|Homo sapiens HLA-DRB2 protein.
          Length = 269

 Score = 29.1 bits (62), Expect = 7.7
 Identities = 17/58 (29%), Positives = 29/58 (50%)
 Frame = +2

Query: 221 KQKLRVKGPVRMPTKVLRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQIT 394
           K+ LR+ G +R PT  L +    TP  EG    + F ++  K +    + +E V+ +T
Sbjct: 4   KKALRIPGGLRAPTVTLMLAMLSTPVAEGRDPPEDFVLQF-KAMCYFTNGTERVRYVT 60


>AY663414-1|AAU88032.1|  261|Homo sapiens MHC class II antigen
           protein.
          Length = 261

 Score = 29.1 bits (62), Expect = 7.7
 Identities = 17/58 (29%), Positives = 29/58 (50%)
 Frame = +2

Query: 221 KQKLRVKGPVRMPTKVLRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQIT 394
           K+ LR+ G +R PT  L +    TP  EG    + F ++  K +    + +E V+ +T
Sbjct: 4   KKALRIPGGLRAPTVTLMLAMLSTPVAEGRDPPEDFVLQF-KAMCYFTNGTERVRYVT 60


>AY375869-1|AAQ88043.1|  234|Homo sapiens MHC class II antigen
           protein.
          Length = 234

 Score = 29.1 bits (62), Expect = 7.7
 Identities = 17/58 (29%), Positives = 29/58 (50%)
 Frame = +2

Query: 221 KQKLRVKGPVRMPTKVLRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQIT 394
           K+ LR+ G +R PT  L +    TP  EG    + F ++  K +    + +E V+ +T
Sbjct: 4   KKALRIPGGLRAPTVTLMLAMLSTPVAEGRDPPEDFVLQF-KAMCYFTNGTERVRYVT 60


>AY375868-1|AAQ88042.1|  234|Homo sapiens MHC class II antigen
           protein.
          Length = 234

 Score = 29.1 bits (62), Expect = 7.7
 Identities = 17/58 (29%), Positives = 29/58 (50%)
 Frame = +2

Query: 221 KQKLRVKGPVRMPTKVLRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQIT 394
           K+ LR+ G +R PT  L +    TP  EG    + F ++  K +    + +E V+ +T
Sbjct: 4   KKALRIPGGLRAPTVTLMLAMLSTPVAEGRDPPEDFVLQF-KAMCYFTNGTERVRYVT 60


>AF000447-1|AAB86436.1|  255|Homo sapiens MHC class II HLA-DQB1
           protein.
          Length = 255

 Score = 29.1 bits (62), Expect = 7.7
 Identities = 17/58 (29%), Positives = 29/58 (50%)
 Frame = +2

Query: 221 KQKLRVKGPVRMPTKVLRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQIT 394
           K+ LR+ G +R PT  L +    TP  EG    + F ++  K +    + +E V+ +T
Sbjct: 1   KKALRIPGGLRAPTVTLMLAMLSTPVAEGRDPPEDFVLQF-KAMCYFTNGTERVRYVT 57


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 73,726,476
Number of Sequences: 237096
Number of extensions: 1641509
Number of successful extensions: 3978
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3766
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3977
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 3872123864
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)