Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_E11
         (459 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       24   0.69 
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    23   1.6  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   1.6  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    23   1.6  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   2.1  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 24.2 bits (50), Expect = 0.69
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = +1

Query: 202 PHQWSQETKTPCKGSSPNADQGSP 273
           PHQ  Q    P +GS PN  QG P
Sbjct: 27  PHQSPQ---APQRGSPPNPSQGPP 47


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 23.0 bits (47), Expect = 1.6
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = -2

Query: 344 CGCASGICPKSWNPHRKVFY 285
           C    G+CP   N  R VFY
Sbjct: 352 CSKLKGLCPSMANYDRGVFY 371


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 23.0 bits (47), Expect = 1.6
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -1

Query: 459 GSCAYASAMVTSTSTPGS 406
           G  +Y +A + +TSTPGS
Sbjct: 221 GRPSYTTATMATTSTPGS 238



 Score = 21.8 bits (44), Expect = 3.7
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +1

Query: 202 PHQWSQETKTPCKGSSPNADQGS 270
           PHQ       P +GSSP+   G+
Sbjct: 318 PHQHHPSQYHPHRGSSPHHQHGN 340


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 23.0 bits (47), Expect = 1.6
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = -2

Query: 344 CGCASGICPKSWNPHRKVFY 285
           C    G+CP   N  R VFY
Sbjct: 442 CSKLKGLCPSMANYDRGVFY 461


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 22.6 bits (46), Expect = 2.1
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +1

Query: 133 TDPSYQDHADVTQCTLTGEG 192
           T    +DH DVTQC    +G
Sbjct: 613 TQYQIRDHKDVTQCISCRQG 632


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,256
Number of Sequences: 438
Number of extensions: 2997
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12189771
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)