Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_E11
         (459 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g47370.2 68416.m05151 40S ribosomal protein S20 (RPS20B) 40S ...   177   2e-45
At3g47370.1 68416.m05150 40S ribosomal protein S20 (RPS20B) 40S ...   177   2e-45
At5g62300.1 68418.m07821 40S ribosomal protein S20 (RPS20C) ribo...   175   9e-45
At3g45030.1 68416.m04851 40S ribosomal protein S20 (RPS20A) 40S ...   175   9e-45
At3g13120.1 68416.m01642 30S ribosomal protein S10, chloroplast,...    61   3e-10

>At3g47370.2 68416.m05151 40S ribosomal protein S20 (RPS20B) 40S
           RIBOSOMAL PROTEIN S20 - ARABIDOPSIS
           THALIANA,PID:g1350956
          Length = 122

 Score =  177 bits (432), Expect = 2e-45
 Identities = 79/109 (72%), Positives = 98/109 (89%)
 Frame = +2

Query: 119 QAEISPIHRIRITLTSRNVRSLEKVCSDLINGAKKQKLRVKGPVRMPTKVLRITTRKTPC 298
           +A +  IH+IRITL+S+NV++LEKVC+DL+ GAK ++LRVKGPVRMPTKVL+ITTRK PC
Sbjct: 14  EAPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLKITTRKAPC 73

Query: 299 GEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSINIEPGVEVEVTIADA 445
           GEG+ TWDRF++R+HKRVIDL S  ++VKQITSI IEPGVEVEVTIAD+
Sbjct: 74  GEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIADS 122


>At3g47370.1 68416.m05150 40S ribosomal protein S20 (RPS20B) 40S
           RIBOSOMAL PROTEIN S20 - ARABIDOPSIS
           THALIANA,PID:g1350956
          Length = 122

 Score =  177 bits (432), Expect = 2e-45
 Identities = 79/109 (72%), Positives = 98/109 (89%)
 Frame = +2

Query: 119 QAEISPIHRIRITLTSRNVRSLEKVCSDLINGAKKQKLRVKGPVRMPTKVLRITTRKTPC 298
           +A +  IH+IRITL+S+NV++LEKVC+DL+ GAK ++LRVKGPVRMPTKVL+ITTRK PC
Sbjct: 14  EAPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLKITTRKAPC 73

Query: 299 GEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSINIEPGVEVEVTIADA 445
           GEG+ TWDRF++R+HKRVIDL S  ++VKQITSI IEPGVEVEVTIAD+
Sbjct: 74  GEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIADS 122


>At5g62300.1 68418.m07821 40S ribosomal protein S20 (RPS20C)
           ribosomal protein S20, Arabidopsis thaliana, PIR:T12992
          Length = 124

 Score =  175 bits (427), Expect = 9e-45
 Identities = 78/106 (73%), Positives = 96/106 (90%)
 Frame = +2

Query: 128 ISPIHRIRITLTSRNVRSLEKVCSDLINGAKKQKLRVKGPVRMPTKVLRITTRKTPCGEG 307
           +  IH+IRITL+S+NV++LEKVC+DL+ GAK ++LRVKGPVRMPTKVL+ITTRK PCGEG
Sbjct: 19  LEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLKITTRKAPCGEG 78

Query: 308 SKTWDRFQMRIHKRVIDLHSPSEIVKQITSINIEPGVEVEVTIADA 445
           + TWDRF++R+HKRVIDL S  ++VKQITSI IEPGVEVEVTIAD+
Sbjct: 79  TNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIADS 124


>At3g45030.1 68416.m04851 40S ribosomal protein S20 (RPS20A) 40S
           ribsomomal proteinS20, Arabidopsis thaliana, pir:T12992
          Length = 124

 Score =  175 bits (427), Expect = 9e-45
 Identities = 78/106 (73%), Positives = 96/106 (90%)
 Frame = +2

Query: 128 ISPIHRIRITLTSRNVRSLEKVCSDLINGAKKQKLRVKGPVRMPTKVLRITTRKTPCGEG 307
           +  IH+IRITL+S+NV++LEKVC+DL+ GAK ++LRVKGPVRMPTKVL+ITTRK PCGEG
Sbjct: 19  LEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLKITTRKAPCGEG 78

Query: 308 SKTWDRFQMRIHKRVIDLHSPSEIVKQITSINIEPGVEVEVTIADA 445
           + TWDRF++R+HKRVIDL S  ++VKQITSI IEPGVEVEVTIAD+
Sbjct: 79  TNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIADS 124


>At3g13120.1 68416.m01642 30S ribosomal protein S10, chloroplast,
           putative similar to 30S ribosomal protein S10 GB:P02364
           [Escherichia coli] (est matches suggest the N-terminal
           extension)
          Length = 191

 Score = 61.3 bits (142), Expect = 3e-10
 Identities = 36/127 (28%), Positives = 65/127 (51%), Gaps = 1/127 (0%)
 Frame = +2

Query: 59  PEYRNNMAAAVVSGKDIEKPQAEISPIHRIRITLTSRNVRSLEKVCSDLINGAKKQKLRV 238
           PE  +  A+ V S   I     +++P  +IRI L S  V  +E  C  +++ A+    + 
Sbjct: 66  PEILDEPASEVPSSSSISVDADKMAPKQKIRIKLRSYWVPLIEDSCKQILDAARNTNAKT 125

Query: 239 KGPVRMPTKVLRITTRKTPCGEGSKTWDRFQMRIHKRVID-LHSPSEIVKQITSINIEPG 415
            GPV +PTK       K+P       +  F++R H+R+ID L+  ++ +  +  +++  G
Sbjct: 126 MGPVPLPTKKRIYCVLKSPHVHKDARF-HFEIRTHQRMIDILYPTAQTIDSLMQLDLPAG 184

Query: 416 VEVEVTI 436
           V+VEV +
Sbjct: 185 VDVEVKL 191


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,879,968
Number of Sequences: 28952
Number of extensions: 229522
Number of successful extensions: 620
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 604
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 619
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 762235320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)