Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_E10
(457 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_15870| Best HMM Match : No HMM Matches (HMM E-Value=.) 91 4e-19
SB_54666| Best HMM Match : No HMM Matches (HMM E-Value=.) 75 2e-14
SB_28512| Best HMM Match : No HMM Matches (HMM E-Value=.) 58 5e-09
SB_53794| Best HMM Match : Mito_carr (HMM E-Value=0.00014) 56 1e-08
SB_18218| Best HMM Match : Mito_carr (HMM E-Value=0) 51 4e-07
SB_11756| Best HMM Match : Mito_carr (HMM E-Value=0) 41 6e-04
SB_17703| Best HMM Match : Mito_carr (HMM E-Value=0) 38 0.003
SB_54004| Best HMM Match : Mito_carr (HMM E-Value=0) 38 0.004
SB_31912| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.009
SB_36589| Best HMM Match : Mito_carr (HMM E-Value=0) 36 0.021
SB_3139| Best HMM Match : Mito_carr (HMM E-Value=0) 34 0.064
SB_49149| Best HMM Match : Mito_carr (HMM E-Value=4.7e-22) 33 0.11
SB_50582| Best HMM Match : Mito_carr (HMM E-Value=2.1e-23) 33 0.11
SB_46794| Best HMM Match : Mito_carr (HMM E-Value=1.12104e-44) 32 0.20
SB_1246| Best HMM Match : Mito_carr (HMM E-Value=1.4013e-45) 32 0.20
SB_32253| Best HMM Match : Mito_carr (HMM E-Value=1.6e-31) 32 0.26
SB_51010| Best HMM Match : Mito_carr (HMM E-Value=0) 31 0.34
SB_46795| Best HMM Match : Mito_carr (HMM E-Value=0) 31 0.34
SB_9806| Best HMM Match : Mito_carr (HMM E-Value=0.061) 31 0.34
SB_52834| Best HMM Match : Mito_carr (HMM E-Value=6.7e-34) 31 0.45
SB_42958| Best HMM Match : Mito_carr (HMM E-Value=4.60046e-42) 31 0.45
SB_6736| Best HMM Match : efhand (HMM E-Value=2.6e-21) 30 1.0
SB_23056| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.6
SB_58134| Best HMM Match : DAGAT (HMM E-Value=0) 27 7.4
SB_27773| Best HMM Match : Mito_carr (HMM E-Value=0) 27 7.4
SB_24711| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.4
SB_22048| Best HMM Match : RHS_repeat (HMM E-Value=0.00058) 27 7.4
SB_23341| Best HMM Match : Pkinase_Tyr (HMM E-Value=0.065) 27 9.7
>SB_15870| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 304
Score = 91.1 bits (216), Expect = 4e-19
Identities = 47/84 (55%), Positives = 56/84 (66%), Gaps = 1/84 (1%)
Frame = +2
Query: 209 FAKDFLAGGISAAVSKTAVAPIERVKLLLQVQ-HVSKQIADDQRYKGIVDAFVRIPNEQC 385
F ++F G +A +SKTA APIERVKLL+Q Q + K D YKG++D R +
Sbjct: 9 FVENFGLSGAAAIISKTAAAPIERVKLLVQNQDEMLKAGRLDHPYKGVIDCTSRTYRSEG 68
Query: 386 LLSFWRGNFANVIRYFPTQALNFA 457
LSFWRGN AN IRYFPTQALNFA
Sbjct: 69 FLSFWRGNLANCIRYFPTQALNFA 92
Score = 27.1 bits (57), Expect = 7.4
Identities = 10/31 (32%), Positives = 20/31 (64%)
Frame = +2
Query: 335 RYKGIVDAFVRIPNEQCLLSFWRGNFANVIR 427
+YKG +D ++I ++ +S +G AN++R
Sbjct: 248 KYKGSIDCTIQILKKEGAMSLMKGAGANILR 278
>SB_54666| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 262
Score = 75.4 bits (177), Expect = 2e-14
Identities = 36/81 (44%), Positives = 56/81 (69%)
Frame = +2
Query: 215 KDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIADDQRYKGIVDAFVRIPNEQCLLS 394
K LAGGI+ AVS+T+V+P+ERVK+LLQ+Q + ++KG++ ++I E+ +L
Sbjct: 36 KHLLAGGIAGAVSRTSVSPLERVKILLQIQ------VKNPKFKGVLPTLIQIGKEEGILG 89
Query: 395 FWRGNFANVIRYFPTQALNFA 457
+++GN NVIR FP A+ FA
Sbjct: 90 YFKGNGTNVIRIFPYSAVQFA 110
>SB_28512| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 453
Score = 57.6 bits (133), Expect = 5e-09
Identities = 33/75 (44%), Positives = 42/75 (56%)
Frame = +2
Query: 230 GGISAAVSKTAVAPIERVKLLLQVQHVSKQIADDQRYKGIVDAFVRIPNEQCLLSFWRGN 409
GG A VS+TA AP++R+K+LLQVQ A GIV F + E + S WRGN
Sbjct: 143 GGALAGVSRTATAPLDRLKVLLQVQ------ASSTNRFGIVSGFKMMLREGGIKSLWRGN 196
Query: 410 FANVIRYFPTQALNF 454
ANVI+ P + F
Sbjct: 197 GANVIKIAPESGIKF 211
Score = 35.5 bits (78), Expect = 0.021
Identities = 20/78 (25%), Positives = 42/78 (53%)
Frame = +2
Query: 224 LAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIADDQRYKGIVDAFVRIPNEQCLLSFWR 403
LAG ++ S+T++ P+E +K L ++ + Y+G++ A I ++ + SF+R
Sbjct: 235 LAGSMAGVASQTSIYPLEVLKTRLAIRKTGQ-------YRGLLHAASVIYQKEGIRSFYR 287
Query: 404 GNFANVIRYFPTQALNFA 457
G F +++ P ++ A
Sbjct: 288 GLFPSLLGIIPYAGIDLA 305
>SB_53794| Best HMM Match : Mito_carr (HMM E-Value=0.00014)
Length = 76
Score = 56.0 bits (129), Expect = 1e-08
Identities = 32/75 (42%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Frame = +2
Query: 182 MSNLADPVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQ-HVSKQIADDQRYKGIVDA 358
MS + F ++F G +A +SKTA APIERVKLL+Q Q + K YKG+VD
Sbjct: 1 MSGKKQNLHFVENFALSGAAAIISKTAAAPIERVKLLVQNQDEMLKAGRLSSPYKGVVDC 60
Query: 359 FVRIPNEQCLLSFWR 403
+R + + SFWR
Sbjct: 61 TMRTYRAEGIGSFWR 75
>SB_18218| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 375
Score = 51.2 bits (117), Expect = 4e-07
Identities = 25/85 (29%), Positives = 46/85 (54%)
Frame = +2
Query: 203 VAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIADDQRYKGIVDAFVRIPNEQ 382
+ + + FL GG SA ++++ +P+E VK+L QV + G++ F + +
Sbjct: 56 ITWFQSFLCGGTSAVLARSLTSPLEVVKVLAQV-------GTQEAKPGLIRTFASVYKRE 108
Query: 383 CLLSFWRGNFANVIRYFPTQALNFA 457
+ +FW+GN + IR FP A+ +A
Sbjct: 109 GIKAFWKGNGVSCIRLFPYSAVQYA 133
Score = 40.7 bits (91), Expect = 6e-04
Identities = 25/71 (35%), Positives = 37/71 (52%)
Frame = +2
Query: 224 LAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIADDQRYKGIVDAFVRIPNEQCLLSFWR 403
LAG S ++ V P E +K L VQHV+K A YKG+ A I E+ +L+ ++
Sbjct: 157 LAGTSSTLIAMVTVYPCEVIKTRLTVQHVNKSNA---HYKGMRHALKTILREEGILALYK 213
Query: 404 GNFANVIRYFP 436
G + + FP
Sbjct: 214 GVTPSFLGLFP 224
>SB_11756| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 274
Score = 40.7 bits (91), Expect = 6e-04
Identities = 22/76 (28%), Positives = 40/76 (52%)
Frame = +2
Query: 227 AGGISAAVSKTAVAPIERVKLLLQVQHVSKQIADDQRYKGIVDAFVRIPNEQCLLSFWRG 406
AG ++ +AP++ VK+ LQ+Q +K+ + Y+G VD V++ + L ++G
Sbjct: 39 AGSVAGLAQVPLIAPVDLVKIKLQMQTEAKR-STRSVYRGPVDCLVKLYRSRGLAGCFQG 97
Query: 407 NFANVIRYFPTQALNF 454
N +R P A+ F
Sbjct: 98 NTVTAVRDIPGFAVYF 113
Score = 35.9 bits (79), Expect = 0.016
Identities = 26/90 (28%), Positives = 43/90 (47%)
Frame = +2
Query: 185 SNLADPVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIADDQRYKGIVDAFV 364
SNL A +AGG + VS + P + +K +Q + RYKG++D +
Sbjct: 124 SNLFGSRGVATYLMAGGFAGVVSWASTFPFDVIKSRIQADGNLGKF----RYKGMMDCAL 179
Query: 365 RIPNEQCLLSFWRGNFANVIRYFPTQALNF 454
+ E+ ++ F RG + ++R F Q L F
Sbjct: 180 QSYKEEGMIVFTRGIWPTLLRGF-LQVLRF 208
>SB_17703| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 611
Score = 38.3 bits (85), Expect = 0.003
Identities = 21/75 (28%), Positives = 34/75 (45%)
Frame = +2
Query: 221 FLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIADDQRYKGIVDAFVRIPNEQCLLSFW 400
F +GGI+ +S P++ VK Q + +Y G D +I + +F
Sbjct: 361 FFSGGIAGTLSWILTYPVDMVKSCYQADGRTNSGKPQYKYNGYADCVKKIYISGGVSAFG 420
Query: 401 RGNFANVIRYFPTQA 445
+G A ++R FPT A
Sbjct: 421 QGLLATILRGFPTNA 435
>SB_54004| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 309
Score = 37.9 bits (84), Expect = 0.004
Identities = 20/81 (24%), Positives = 42/81 (51%)
Frame = +2
Query: 212 AKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIADDQRYKGIVDAFVRIPNEQCLL 391
A++ +AG +S + A P++ +K+ LQ + K + +KG +D F++ + L
Sbjct: 21 ARNLIAGSVSGMLGCAAGQPLDLLKVRLQAMNQVKP-GETAPFKGAMDCFMKTVRLEGLR 79
Query: 392 SFWRGNFANVIRYFPTQALNF 454
++G + ++ P+ AL F
Sbjct: 80 GLYKGMLSPLLMATPSTALTF 100
>SB_31912| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 179
Score = 36.7 bits (81), Expect = 0.009
Identities = 20/79 (25%), Positives = 35/79 (44%), Gaps = 3/79 (3%)
Frame = +2
Query: 179 KMSNLADPVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQ---HVSKQIADDQRYKGI 349
K+ N P + G +S +SK + P + +K +QVQ + Q+Y G+
Sbjct: 19 KVHNPYKPADVIESLTCGALSGMISKAVILPFDIIKKRIQVQGFEEARQSFGRVQQYDGV 78
Query: 350 VDAFVRIPNEQCLLSFWRG 406
D F I E+ + ++G
Sbjct: 79 KDCFRTILKEEGAMGLFKG 97
>SB_36589| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 264
Score = 35.5 bits (78), Expect = 0.021
Identities = 20/79 (25%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Frame = +2
Query: 221 FLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIADDQRYKGIVDAFVRIPNEQCL-LSF 397
F+ GG++ AVS+T P++ V+ +Q ++ + D +Y ++ V + + +
Sbjct: 176 FVCGGVAGAVSQTIAYPLDVVRRRMQ---LAGAVPDGHKYNTCINTLVNVYKDDGIRRGL 232
Query: 398 WRGNFANVIRYFPTQALNF 454
+RG N +R P A+ F
Sbjct: 233 YRGLSINYLRVCPQVAIMF 251
>SB_3139| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 276
Score = 33.9 bits (74), Expect = 0.064
Identities = 22/86 (25%), Positives = 42/86 (48%), Gaps = 9/86 (10%)
Frame = +2
Query: 197 DPVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAD---------DQRYKGI 349
DP K F + GI+A++++ A PI+ K+ LQ+Q S +A D Y+G+
Sbjct: 11 DPSILVK-FCSAGIAASIAEAATIPIDTAKVRLQIQGESAVMASIAQGVRTTHDAHYRGM 69
Query: 350 VDAFVRIPNEQCLLSFWRGNFANVIR 427
+ V + + + + ++G + R
Sbjct: 70 LGTMVTLFKTEGMKTMYKGLIPGIHR 95
>SB_49149| Best HMM Match : Mito_carr (HMM E-Value=4.7e-22)
Length = 95
Score = 33.1 bits (72), Expect = 0.11
Identities = 13/45 (28%), Positives = 26/45 (57%)
Frame = +2
Query: 320 IADDQRYKGIVDAFVRIPNEQCLLSFWRGNFANVIRYFPTQALNF 454
I ++Y G+++AF RI ++ + +F+RG +I P ++F
Sbjct: 19 ITQKKKYTGLINAFTRIYRDEGMRTFYRGYVPTLIGIMPYAGISF 63
>SB_50582| Best HMM Match : Mito_carr (HMM E-Value=2.1e-23)
Length = 1026
Score = 33.1 bits (72), Expect = 0.11
Identities = 19/71 (26%), Positives = 34/71 (47%)
Frame = +2
Query: 236 ISAAVSKTAVAPIERVKLLLQVQHVSKQIADDQRYKGIVDAFVRIPNEQCLLSFWRGNFA 415
I A TAV PI+ VK +Q Q + ++ YK +D F ++ + + +RG
Sbjct: 922 IKKATGATAVYPIDLVKTRMQNQRAVLEA--EKVYKNSIDCFFKVVRNEGPIGLYRGLLP 979
Query: 416 NVIRYFPTQAL 448
++ P +A+
Sbjct: 980 QLLGVSPEKAI 990
>SB_46794| Best HMM Match : Mito_carr (HMM E-Value=1.12104e-44)
Length = 192
Score = 32.3 bits (70), Expect = 0.20
Identities = 21/78 (26%), Positives = 31/78 (39%)
Frame = +2
Query: 221 FLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIADDQRYKGIVDAFVRIPNEQCLLSFW 400
F A IS + A P++ K +Q + I YKG +D RI + + + W
Sbjct: 97 FGASMISGLATTVASMPVDIAKTRIQNMRI---IDGKPEYKGTMDVLARIVRNEGVFALW 153
Query: 401 RGNFANVIRYFPTQALNF 454
+G R P L F
Sbjct: 154 KGFTPYYFRIGPHTVLTF 171
>SB_1246| Best HMM Match : Mito_carr (HMM E-Value=1.4013e-45)
Length = 773
Score = 32.3 bits (70), Expect = 0.20
Identities = 12/41 (29%), Positives = 23/41 (56%)
Frame = +2
Query: 335 RYKGIVDAFVRIPNEQCLLSFWRGNFANVIRYFPTQALNFA 457
+Y G+ +I ++ L +++GN N++R P A+ FA
Sbjct: 590 KYSGVGGTLAKIYRDEGLYGYFKGNGTNIVRIVPYTAVQFA 630
>SB_32253| Best HMM Match : Mito_carr (HMM E-Value=1.6e-31)
Length = 233
Score = 31.9 bits (69), Expect = 0.26
Identities = 20/81 (24%), Positives = 40/81 (49%)
Frame = +2
Query: 215 KDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIADDQRYKGIVDAFVRIPNEQCLLS 394
+ FLAGG ++ V +T P++ + L +Q + + KG ++
Sbjct: 107 RGFLAGGCASIVGQTITVPVDIISQKLMIQGQGDR---KVKLKGARILIRETFHQHGPGG 163
Query: 395 FWRGNFANVIRYFPTQALNFA 457
F++G FA+++ Y P+ A+ +A
Sbjct: 164 FYKGYFASLMTYAPSSAIWWA 184
>SB_51010| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 306
Score = 31.5 bits (68), Expect = 0.34
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Frame = +2
Query: 224 LAGGISAAVSKTAVA-PIERVKLLLQVQHVSKQIADDQRYKGIVDAFVRIPNEQCLLSFW 400
+ G+S+ V +A+A P + VK+ Q + + I YK + AF +I ++ L W
Sbjct: 118 IVAGVSSGVIGSAIATPTDLVKIRFQAVKIGETIP----YKNMFHAFYKIAKKEGFLGLW 173
Query: 401 RG 406
G
Sbjct: 174 TG 175
>SB_46795| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 328
Score = 31.5 bits (68), Expect = 0.34
Identities = 23/88 (26%), Positives = 38/88 (43%)
Frame = +2
Query: 173 SNKMSNLADPVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIADDQRYKGIV 352
S K+ DP + AG I+ + + P++RVK +LQ++ + Y G V
Sbjct: 126 SYKLPVSKDP-ELLRSLAAGMIAGVATSFVLTPLDRVKCILQIE----KAFGGSSYGGPV 180
Query: 353 DAFVRIPNEQCLLSFWRGNFANVIRYFP 436
D RI E + ++G +R P
Sbjct: 181 DCLRRIYREAGVRGVYKGISVTAMRDIP 208
>SB_9806| Best HMM Match : Mito_carr (HMM E-Value=0.061)
Length = 114
Score = 31.5 bits (68), Expect = 0.34
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +2
Query: 233 GISAAVSKTAVAPIERVKLLLQVQH 307
G+S +KT AP+ER+K+L Q Q+
Sbjct: 63 GLSTCCAKTTTAPLERLKILFQAQN 87
>SB_52834| Best HMM Match : Mito_carr (HMM E-Value=6.7e-34)
Length = 302
Score = 31.1 bits (67), Expect = 0.45
Identities = 18/70 (25%), Positives = 36/70 (51%)
Frame = +2
Query: 227 AGGISAAVSKTAVAPIERVKLLLQVQHVSKQIADDQRYKGIVDAFVRIPNEQCLLSFWRG 406
AG ++ + AV P++ +K LQ+ + + + Y GI+D +I + + L +F++G
Sbjct: 211 AGCLAGMTASVAVNPLDVIKTRLQLLNRPQ---GEPNYNGIIDCAKKIYSNEGLAAFYKG 267
Query: 407 NFANVIRYFP 436
+I P
Sbjct: 268 AVPRMIVIAP 277
>SB_42958| Best HMM Match : Mito_carr (HMM E-Value=4.60046e-42)
Length = 247
Score = 31.1 bits (67), Expect = 0.45
Identities = 18/47 (38%), Positives = 26/47 (55%)
Frame = +2
Query: 266 APIERVKLLLQVQHVSKQIADDQRYKGIVDAFVRIPNEQCLLSFWRG 406
AP ERVK LLQVQ K+ RY+G+ D +++ L ++G
Sbjct: 179 APTERVKCLLQVQ---KESGTKARYQGLGDCLLQVYRTGGLRGVFKG 222
>SB_6736| Best HMM Match : efhand (HMM E-Value=2.6e-21)
Length = 198
Score = 29.9 bits (64), Expect = 1.0
Identities = 10/24 (41%), Positives = 18/24 (75%)
Frame = +2
Query: 227 AGGISAAVSKTAVAPIERVKLLLQ 298
AGG++ S+T AP+E++K++ Q
Sbjct: 175 AGGVAGVASRTLTAPLEKMKIIAQ 198
>SB_23056| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 266
Score = 27.5 bits (58), Expect = 5.6
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = +2
Query: 350 VDAFVRIPNEQCLLSFWRGNFANVIRYFPTQALNF 454
+DA ++IP + L S WRG ++ P + F
Sbjct: 64 IDALIKIPRYEGLSSLWRGLPPTMVMAVPNTVIYF 98
>SB_58134| Best HMM Match : DAGAT (HMM E-Value=0)
Length = 288
Score = 27.1 bits (57), Expect = 7.4
Identities = 10/40 (25%), Positives = 19/40 (47%)
Frame = -2
Query: 240 EIPPARKSLANATGSARFDILFDYVVLFGWILADKEGLRH 121
+ P + G+ +F + DY++ FG +KE + H
Sbjct: 135 KFPGITPHILTLAGNMKFPVTRDYMMAFGVCTVEKESIHH 174
>SB_27773| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 203
Score = 27.1 bits (57), Expect = 7.4
Identities = 19/77 (24%), Positives = 33/77 (42%)
Frame = +2
Query: 224 LAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIADDQRYKGIVDAFVRIPNEQCLLSFWR 403
LAG + A+ PIE +K LQ+ Y+G++ + E+ + +F+R
Sbjct: 2 LAGACATVFHDGAMNPIEVIKQRLQMY--------GSPYRGVIHCATSVFKEEGIRAFYR 53
Query: 404 GNFANVIRYFPTQALNF 454
+ P Q L+F
Sbjct: 54 SYTTQLSMNIPFQTLHF 70
>SB_24711| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 323
Score = 27.1 bits (57), Expect = 7.4
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -3
Query: 224 ESLWRTRLDRRDSTFCSIMWSSLGGYLRTRKDFGTHG 114
E+L R + DRR T + GG+++ RK F +G
Sbjct: 96 ENLIRFKSDRRGKTLIQLRNLGKGGWIKPRKLFNENG 132
>SB_22048| Best HMM Match : RHS_repeat (HMM E-Value=0.00058)
Length = 820
Score = 27.1 bits (57), Expect = 7.4
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = -1
Query: 139 QGRTSAHTEWKNHEKRTPD 83
QGRT HT NHEK T +
Sbjct: 675 QGRTGGHTASDNHEKGTKE 693
>SB_23341| Best HMM Match : Pkinase_Tyr (HMM E-Value=0.065)
Length = 263
Score = 26.6 bits (56), Expect = 9.7
Identities = 16/31 (51%), Positives = 17/31 (54%)
Frame = +1
Query: 229 WRYLRRRLQDSRSAHRARQIAAPSPARQQTD 321
+R R Q SRSA I A SP RQQTD
Sbjct: 222 YRQYRTINQTSRSAVTNVSIFANSPTRQQTD 252
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,245,812
Number of Sequences: 59808
Number of extensions: 321920
Number of successful extensions: 956
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 894
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 946
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 920703675
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -