Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_E09
(274 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC530.12c |pdf1||palmitoyl protein thioesterase-dolichol pyrop... 26 0.83
SPBC19C7.06 |||proline-tRNA ligase |Schizosaccharomyces pombe|ch... 25 1.5
SPBC31E1.04 |pep12||SNARE Pep12|Schizosaccharomyces pombe|chr 2|... 25 1.5
SPAC1B3.20 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 25 1.9
SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos... 25 1.9
SPAC19D5.05c |||U3 snoRNP-associated protein Imp3 |Schizosacchar... 25 2.5
SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 25 2.5
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc... 24 3.4
SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|ch... 24 3.4
SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3 |Schiz... 23 5.9
SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual 23 5.9
SPAC144.18 |||nucleotide sugar transporter |Schizosaccharomyces ... 23 7.8
SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit Ssr1|Schizosa... 23 7.8
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo... 23 7.8
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ... 23 7.8
>SPBC530.12c |pdf1||palmitoyl protein thioesterase-dolichol
pyrophosphate phosphatase fusion 1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 603
Score = 26.2 bits (55), Expect = 0.83
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = +1
Query: 49 DGNLEYKHSMPMLSRRRNFKNL 114
DG ++Y H + +RNFK L
Sbjct: 328 DGTVDYLHGKSLFPEKRNFKEL 349
Score = 25.4 bits (53), Expect = 1.5
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -2
Query: 243 LTYTTYAVYITIFTRVWSYNYIKCFFQHY 157
L++ YA+Y+T+ T V S Y+ F HY
Sbjct: 505 LSFAKYAIYLTLSTFVCSSRYLLDF--HY 531
>SPBC19C7.06 |||proline-tRNA ligase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 716
Score = 25.4 bits (53), Expect = 1.5
Identities = 11/46 (23%), Positives = 26/46 (56%)
Frame = +1
Query: 130 NDGQENIYTVMLKETFDIIITPNSSEDSDVYSICSICETRLKDAAQ 267
ND ++N T + ++TF+ I P ++ + V + + +T + + A+
Sbjct: 568 NDAKKNQVTAVRRDTFEKIPVPLNNLEKGVSDLLAKIQTNMYETAK 613
>SPBC31E1.04 |pep12||SNARE Pep12|Schizosaccharomyces pombe|chr
2|||Manual
Length = 317
Score = 25.4 bits (53), Expect = 1.5
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = -2
Query: 225 AVYITIFTRVWSYNYIKCFFQHYSV 151
++Y++ +RVWS Y+ F YS+
Sbjct: 283 SLYVSCSSRVWSLPYVHAFKIAYSI 307
>SPAC1B3.20 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 78
Score = 25.0 bits (52), Expect = 1.9
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = +1
Query: 70 HSMPMLSRRRNFKNLAAPYTNDGQENIYTVMLKETFDI 183
H MP L F P+++ G N+ + LKE D+
Sbjct: 34 HGMPPLRGPAGFPVNPRPFSHGGNANLDRLNLKEPVDL 71
>SPBC17D11.05 |tif32||translation initiation factor
eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
Length = 932
Score = 25.0 bits (52), Expect = 1.9
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = -3
Query: 140 WPSLV*GAARFLKFLLRDNIGIECLYSRFPSS*NMFLIKFQK 15
W + A R + +LR+N +E +Y +S F +K+Q+
Sbjct: 151 WLKFLWDAYRTVLDILRNNARLEVMYQLIANSAFQFCLKYQR 192
>SPAC19D5.05c |||U3 snoRNP-associated protein Imp3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 183
Score = 24.6 bits (51), Expect = 2.5
Identities = 12/35 (34%), Positives = 23/35 (65%), Gaps = 3/35 (8%)
Frame = +1
Query: 157 VMLKETFDIIITPNSSEDSDV---YSICSICETRL 252
++L++ FD+ I P+ S+ SD+ ++ +IC RL
Sbjct: 77 LLLEKLFDMGILPSKSKMSDIENKANVSAICRRRL 111
>SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 956
Score = 24.6 bits (51), Expect = 2.5
Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = -3
Query: 254 LRRVSHILHMLYTSLS-SLEFGVIIISNVSFNIT 156
L R H+L + +LEFGVI+ N+S +++
Sbjct: 631 LSRSLHVLQSFSGEIELNLEFGVILYPNISSDVS 664
>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1679
Score = 24.2 bits (50), Expect = 3.4
Identities = 17/60 (28%), Positives = 30/60 (50%)
Frame = -3
Query: 242 SHILHMLYTSLSSLEFGVIIISNVSFNITVYIFSWPSLV*GAARFLKFLLRDNIGIECLY 63
S++LH TSL+ + + + IT Y + ++ RFLK + N+ +ECL+
Sbjct: 712 SNVLHKKTTSLAI--YKELFVYFTRDWITSYGVDFDEILNVLLRFLKEVEDTNVKVECLH 769
>SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 547
Score = 24.2 bits (50), Expect = 3.4
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +1
Query: 106 KNLAAPYTNDGQENIYTVMLKETFDIIITPNSSEDSD 216
K+ AP + IYT+++ I+IT NSS SD
Sbjct: 94 KDPLAPKNWPMWKKIYTLLVASFIAIVITANSSIFSD 130
>SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 900
Score = 23.4 bits (48), Expect = 5.9
Identities = 9/11 (81%), Positives = 10/11 (90%)
Frame = +1
Query: 187 ITPNSSEDSDV 219
I PNSSEDSD+
Sbjct: 8 IDPNSSEDSDI 18
>SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1339
Score = 23.4 bits (48), Expect = 5.9
Identities = 19/61 (31%), Positives = 32/61 (52%)
Frame = -3
Query: 242 SHILHMLYTSLSSLEFGVIIISNVSFNITVYIFSWPSLV*GAARFLKFLLRDNIGIECLY 63
S I +++ + +S+L F NV FNI Y S + V GA R ++FL+ + + +
Sbjct: 262 SVIFNLISSPVSNLAF-----ENV-FNILQYNRSNVNAVRGAVRLMRFLMLQEVKNDAIA 315
Query: 62 S 60
S
Sbjct: 316 S 316
>SPAC144.18 |||nucleotide sugar transporter |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 345
Score = 23.0 bits (47), Expect = 7.8
Identities = 8/33 (24%), Positives = 21/33 (63%)
Frame = -3
Query: 236 ILHMLYTSLSSLEFGVIIISNVSFNITVYIFSW 138
++ M+YT+ +L+F + + + N+T+ I ++
Sbjct: 87 LVAMIYTASKALQFLSVPVYTIFKNLTIIIIAY 119
>SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit
Ssr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 23.0 bits (47), Expect = 7.8
Identities = 13/44 (29%), Positives = 21/44 (47%)
Frame = +1
Query: 142 ENIYTVMLKETFDIIITPNSSEDSDVYSICSICETRLKDAAQFK 273
E++Y E++D+ + S EDSD S + K A+ K
Sbjct: 395 ESVYPKPESESYDVEMNGKSLEDSDSLSELYLTNEEKKMASIIK 438
>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1336
Score = 23.0 bits (47), Expect = 7.8
Identities = 9/25 (36%), Positives = 14/25 (56%)
Frame = +1
Query: 58 LEYKHSMPMLSRRRNFKNLAAPYTN 132
+ Y S LSR F +L +P+T+
Sbjct: 694 INYNESFSQLSRESLFTSLESPFTD 718
>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1337
Score = 23.0 bits (47), Expect = 7.8
Identities = 15/58 (25%), Positives = 24/58 (41%)
Frame = +1
Query: 79 PMLSRRRNFKNLAAPYTNDGQENIYTVMLKETFDIIITPNSSEDSDVYSICSICETRL 252
P+ S RR+ + + D ENI+ + K+ P + S+ IC RL
Sbjct: 849 PLRSIRRSLLSQLTGHQGDYDENIHNDVDKDMNQSSTQPRDPDADHPSSLYHICGYRL 906
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,061,412
Number of Sequences: 5004
Number of extensions: 18579
Number of successful extensions: 51
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 59659786
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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