Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_E09
(274 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_08_0023 + 27741775-27742475,27744163-27744413,27744557-277447... 28 1.2
12_01_0991 - 10057736-10058249,10058412-10059241,10059266-100606... 26 3.6
01_05_0659 - 24061318-24061575,24061664-24061918,24062001-240621... 26 3.6
12_01_0906 + 8799284-8799441,8800865-8801690,8801933-8802055,880... 26 4.7
12_01_0227 - 1718726-1721183,1721804-1721957,1722090-1722165,172... 26 4.7
11_01_0229 - 1771701-1774164,1774694-1774847,1774980-1775055,177... 26 4.7
08_01_0252 + 2060214-2060587,2060710-2061166 26 4.7
01_06_1328 + 36347963-36347984,36348609-36348764,36349083-363492... 26 4.7
11_01_0319 - 2396835-2396951,2397035-2397105,2397219-2397297,239... 25 6.3
05_06_0105 + 25607374-25607673,25608319-25608377,25608761-256089... 25 6.3
01_05_0662 - 24103475-24103735,24103831-24104085,24104280-241044... 25 6.3
01_03_0179 + 13500413-13500768,13502522-13502642,13502876-135029... 25 6.3
>11_08_0023 +
27741775-27742475,27744163-27744413,27744557-27744715,
27744976-27745409,27745537-27746076
Length = 694
Score = 27.9 bits (59), Expect = 1.2
Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Frame = +1
Query: 46 DDGNLEYKHSM----PMLSRRRNFKNLAAPYTNDGQENIYTVMLKETFDIIITPNSSEDS 213
DD N+ HS P S K+++ P G+ +YT +L+ FD+ T +SSE S
Sbjct: 70 DDFNVTCNHSFTPPRPYYSNME-MKDISLP---KGEMRVYTSVLQNCFDLSNTSSSSE-S 124
Query: 214 DVYS 225
DV S
Sbjct: 125 DVGS 128
>12_01_0991 -
10057736-10058249,10058412-10059241,10059266-10060633,
10061785-10062327,10066274-10066498,10066590-10066640
Length = 1176
Score = 26.2 bits (55), Expect = 3.6
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = -2
Query: 270 ELCSIFETSLTYT-TYAVYITIFTRVWSYNYIKCFFQHYSV 151
E CS T L Y A + + +V+ N+ KCF + YS+
Sbjct: 101 ECCSQERTYLPYYGLLAQRLCLINKVYQKNFEKCFAKQYSM 141
>01_05_0659 - 24061318-24061575,24061664-24061918,24062001-24062172,
24062258-24062381,24062442-24062485,24063601-24063734,
24063822-24063905,24064100-24064390,24064713-24065045,
24065145-24065389,24065644-24065910,24065997-24066157,
24066253-24066569,24066665-24066946,24067024-24067325,
24067398-24067488,24067796-24067849,24067963-24068039,
24068159-24068318,24068653-24068737,24069029-24069238,
24069344-24069732
Length = 1444
Score = 26.2 bits (55), Expect = 3.6
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -3
Query: 221 YTSLSSLEFGVIIISNVSFNITVYIFSW 138
YT + S+ +G+I+ S + F T F W
Sbjct: 1281 YTLVQSIIYGIIVYSMIGFKWTAAKFFW 1308
>12_01_0906 +
8799284-8799441,8800865-8801690,8801933-8802055,
8802144-8802210,8802611-8802714,8802798-8802900,
8803103-8803401,8804009-8804263,8805471-8805776,
8805866-8806194,8806829-8806916,8807027-8807164,
8807438-8807458
Length = 938
Score = 25.8 bits (54), Expect = 4.7
Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Frame = -2
Query: 270 ELCSIFETSLTYT-TYAVYITIFTRVWSYNYIKCFFQHYSVYIFLAVVSIRS 118
E CS T L Y + +V+ N+ KCF Q YS+ L +R+
Sbjct: 654 ECCSQERTYLRYYGLLGQRFCMINKVYQENFEKCFVQQYSMIHRLETNKLRN 705
>12_01_0227 - 1718726-1721183,1721804-1721957,1722090-1722165,
1722327-1722485,1722552-1722662,1722791-1722841,
1722948-1723192,1723745-1725278
Length = 1595
Score = 25.8 bits (54), Expect = 4.7
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = +1
Query: 136 GQENIYTVMLKETFDIIITPNSSEDSDVYSICSICETRLKDAAQFK 273
G++ + V K FDI NS+ ++ ++S+C L++A FK
Sbjct: 1463 GKDALLVVFKKLVFDIGDPRNSAYNAIIFSLCR--HNMLREALDFK 1506
>11_01_0229 - 1771701-1774164,1774694-1774847,1774980-1775055,
1775439-1775477,1778516-1778674,1778741-1778851,
1779014-1779064,1779173-1779256
Length = 1045
Score = 25.8 bits (54), Expect = 4.7
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = +1
Query: 136 GQENIYTVMLKETFDIIITPNSSEDSDVYSICSICETRLKDAAQFK 273
G++ + V K FDI NS+ ++ ++S+C L++A FK
Sbjct: 912 GKDALLVVFKKLVFDIGDPRNSAYNAIIFSLCR--HNMLREALDFK 955
>08_01_0252 + 2060214-2060587,2060710-2061166
Length = 276
Score = 25.8 bits (54), Expect = 4.7
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -2
Query: 204 TRVWSYNYIKCFFQHYSVYIFLAVVSIR 121
+R+W Y Y CF ++YS Y F+ V R
Sbjct: 122 SRIW-YEY--CFMRYYSSYNFIGDVDTR 146
>01_06_1328 +
36347963-36347984,36348609-36348764,36349083-36349261,
36349347-36349442,36349525-36349594,36349635-36349705,
36350654-36351286
Length = 408
Score = 25.8 bits (54), Expect = 4.7
Identities = 10/33 (30%), Positives = 16/33 (48%)
Frame = +1
Query: 58 LEYKHSMPMLSRRRNFKNLAAPYTNDGQENIYT 156
L +H +P LS+ PY ++G +YT
Sbjct: 324 LNSQHVIPALSQPAGIYQTVGPYQSNGHPQVYT 356
>11_01_0319 -
2396835-2396951,2397035-2397105,2397219-2397297,
2397417-2397458,2397670-2397723,2397836-2397868,
2397959-2398039,2398144-2398230,2398313-2398388,
2398633-2398808,2398912-2399034,2399249-2399361,
2399521-2399632,2400054-2400273,2401986-2402314,
2402408-2402713,2403580-2403878,2404079-2404181,
2404266-2404369,2404840-2404906,2404911-2405076,
2405241-2405956
Length = 1157
Score = 25.4 bits (53), Expect = 6.3
Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Frame = -2
Query: 270 ELCSIFETSLTYT-TYAVYITIFTRVWSYNYIKCFFQHYSVYIFLAVVSIRS 118
E CS T L Y + +V+ N+ KCF Q YS+ L +R+
Sbjct: 494 ECCSQERTYLRYYGLLGQRFCMINKVYQDNFEKCFVQQYSMIHRLETNKLRN 545
>05_06_0105 +
25607374-25607673,25608319-25608377,25608761-25608917,
25609157-25609461,25609866-25609986,25610334-25610422,
25610491-25610569
Length = 369
Score = 25.4 bits (53), Expect = 6.3
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Frame = +1
Query: 28 IRNIFYDDG-NLEYKHSMPMLSRRRNFKNLAAPYTNDGQENIYTVMLKETFDIIITPNSS 204
IRN+ D G L S+ R+ N+ T+ ++ + TV L D +I PN
Sbjct: 197 IRNVVKDCGAKLADPGSVTFRFRQARVVNIKV--TDADKDQLLTVALDAGADDVIEPNFD 254
Query: 205 EDSD 216
+D D
Sbjct: 255 DDDD 258
>01_05_0662 - 24103475-24103735,24103831-24104085,24104280-24104451,
24104535-24104762,24104864-24104997,24105101-24105184,
24105273-24105563,24105660-24105992,24106081-24106334,
24106435-24106591,24106674-24106777,24106879-24107039,
24107216-24107529,24107614-24107895,24107991-24108292,
24108367-24108457,24108566-24108619,24108785-24108861,
24108963-24109207,24109322-24109410,24110811-24111254
Length = 1443
Score = 25.4 bits (53), Expect = 6.3
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = -3
Query: 233 LHMLYTSLSSLEFGVIIISNVSFNITVYIFSW 138
+ + Y + +L +GV++ S + F TV F W
Sbjct: 1275 IELPYIMVQTLIYGVLVYSMIGFEWTVAKFLW 1306
>01_03_0179 + 13500413-13500768,13502522-13502642,13502876-13502998,
13504409-13504497,13504612-13504696,13504852-13505011,
13505096-13505160,13505296-13505349,13505437-13505527,
13505685-13505986,13506084-13506365,13506451-13506764,
13506920-13507080,13507202-13507305,13507379-13507535,
13507652-13507896,13507995-13508327,13508428-13508751,
13508816-13508899,13509001-13509169,13509610-13509731,
13510538-13510792,13511115-13511252
Length = 1377
Score = 25.4 bits (53), Expect = 6.3
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = -3
Query: 233 LHMLYTSLSSLEFGVIIISNVSFNITVYIFSW 138
+ + Y + +L +GV++ S + F TV F W
Sbjct: 1250 IELPYILVQTLVYGVLVYSMIGFEWTVAKFIW 1281
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,179,132
Number of Sequences: 37544
Number of extensions: 97759
Number of successful extensions: 270
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 269
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 270
length of database: 14,793,348
effective HSP length: 69
effective length of database: 12,202,812
effective search space used: 256259052
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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