Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_E09
(274 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_13369| Best HMM Match : UPF0005 (HMM E-Value=0.3) 31 0.19
SB_15182| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 1.8
SB_19633| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 2.4
SB_47680| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.1
SB_9129| Best HMM Match : efhand (HMM E-Value=0.075) 26 4.1
SB_57980| Best HMM Match : Ribosomal_L20 (HMM E-Value=2.2) 26 5.4
SB_28178| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 5.4
SB_48119| Best HMM Match : TLD (HMM E-Value=2e-14) 26 5.4
SB_57561| Best HMM Match : fn3 (HMM E-Value=0) 25 7.2
SB_51001| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 7.2
SB_48930| Best HMM Match : Adeno_E3_CR2 (HMM E-Value=3) 25 7.2
SB_35560| Best HMM Match : zf-B_box (HMM E-Value=1e-20) 25 7.2
SB_41261| Best HMM Match : Metallothio_11 (HMM E-Value=0.74) 25 9.5
SB_35918| Best HMM Match : Equine_IAV_S2 (HMM E-Value=0.27) 25 9.5
SB_24840| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 9.5
SB_20534| Best HMM Match : DUF21 (HMM E-Value=9.8) 25 9.5
SB_53580| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 9.5
SB_40773| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 9.5
>SB_13369| Best HMM Match : UPF0005 (HMM E-Value=0.3)
Length = 509
Score = 30.7 bits (66), Expect = 0.19
Identities = 11/32 (34%), Positives = 23/32 (71%)
Frame = -3
Query: 236 ILHMLYTSLSSLEFGVIIISNVSFNITVYIFS 141
I+H++ ++++L F +II+ V+F +T +FS
Sbjct: 107 IVHLVIFTVAALVFSIIIVHLVNFTVTALVFS 138
Score = 29.5 bits (63), Expect = 0.44
Identities = 12/32 (37%), Positives = 22/32 (68%)
Frame = -3
Query: 236 ILHMLYTSLSSLEFGVIIISNVSFNITVYIFS 141
I+H++ ++++L F +III V F +T +FS
Sbjct: 124 IVHLVNFTVTALVFSIIIIHLVIFTVTALVFS 155
Score = 27.1 bits (57), Expect = 2.4
Identities = 11/34 (32%), Positives = 22/34 (64%)
Frame = -3
Query: 242 SHILHMLYTSLSSLEFGVIIISNVSFNITVYIFS 141
S I+H++ ++++L F +II+ V F + +FS
Sbjct: 88 SIIVHLVIFTVTALVFPIIIVHLVIFTVAALVFS 121
Score = 25.8 bits (54), Expect = 5.4
Identities = 10/37 (27%), Positives = 24/37 (64%)
Frame = -3
Query: 236 ILHMLYTSLSSLEFGVIIISNVSFNITVYIFSWPSLV 126
I+H++ ++++L +II+ V F +T ++F + S +
Sbjct: 175 IVHLVIFTVTALVSPIIIVHLVIFTLTAFVFPFISSI 211
>SB_15182| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 679
Score = 27.5 bits (58), Expect = 1.8
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = +1
Query: 184 IITPNSSEDSDVYSICSICETRLKDAAQFK 273
++ SS + V +C ICE R +DA++ +
Sbjct: 637 LVQATSSPTTGVLHVCIICEIRRRDASEIR 666
>SB_19633| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 93
Score = 27.1 bits (57), Expect = 2.4
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = -2
Query: 240 TYTTYAVYITIFTRVWSYNYIKCFFQHYSVYIFL 139
TYT VY+ ++ V+ Y Y+ + Y +YI+L
Sbjct: 49 TYTYTYVYVYVYVYVYVYVYVYVYVYVY-IYIYL 81
Score = 25.8 bits (54), Expect = 5.4
Identities = 11/42 (26%), Positives = 23/42 (54%)
Frame = -2
Query: 240 TYTTYAVYITIFTRVWSYNYIKCFFQHYSVYIFLAVVSIRSS 115
TYT VY+ ++ V+ Y Y+ + Y +Y++ ++ + S
Sbjct: 51 TYTYVYVYVYVYVYVYVYVYVYVYVYIY-IYLYDSIAYLHIS 91
>SB_47680| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2749
Score = 26.6 bits (56), Expect = 3.1
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = +1
Query: 58 LEYKHSMPMLSRRRNFKNLAAPYTNDGQENIYTVMLKE 171
L + H P L +R + + YT +G E+IYT ++++
Sbjct: 1845 LPFGHKPPPLDKRVSIDGIH--YTKEGGEDIYTAVIRK 1880
>SB_9129| Best HMM Match : efhand (HMM E-Value=0.075)
Length = 443
Score = 26.2 bits (55), Expect = 4.1
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = +1
Query: 22 NFIRNIFYDDGNLEYKHSMPMLSR 93
NFIR+I Y N K MPMLS+
Sbjct: 225 NFIRSIIYKYYNTLEKKFMPMLSK 248
>SB_57980| Best HMM Match : Ribosomal_L20 (HMM E-Value=2.2)
Length = 472
Score = 25.8 bits (54), Expect = 5.4
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = -3
Query: 233 LHMLYTSLSSLEFGVIIISNVSFNITVYIFSWP 135
LH T +LEF + +SNV F + WP
Sbjct: 310 LHGTSTGCPTLEFVCLFLSNVQFQAYLAAGMWP 342
>SB_28178| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 149
Score = 25.8 bits (54), Expect = 5.4
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = +2
Query: 41 FMMTETWNISTLCRC 85
F ETW I+ LC+C
Sbjct: 96 FARAETWRINVLCKC 110
>SB_48119| Best HMM Match : TLD (HMM E-Value=2e-14)
Length = 870
Score = 25.8 bits (54), Expect = 5.4
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = +1
Query: 100 NFKNLAAPYTNDGQENIYTVMLKETFDIIITPNSSE 207
+F ++A Y DGQ + V+L ++ PN S+
Sbjct: 215 HFLKISAKYITDGQGVVSGVLLVTPHSVMFNPNVSD 250
>SB_57561| Best HMM Match : fn3 (HMM E-Value=0)
Length = 1614
Score = 25.4 bits (53), Expect = 7.2
Identities = 7/16 (43%), Positives = 12/16 (75%)
Frame = -2
Query: 237 YTTYAVYITIFTRVWS 190
YT Y VY+++F +W+
Sbjct: 617 YTRYEVYVSVFNALWT 632
>SB_51001| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 843
Score = 25.4 bits (53), Expect = 7.2
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = -3
Query: 218 TSLSSLEFGVIIISNVSFNITVYIFSWPS 132
T +LEF + +SNV F + + WP+
Sbjct: 151 TGCPTLEFVCLFLSNVQFQVYLAAGMWPT 179
>SB_48930| Best HMM Match : Adeno_E3_CR2 (HMM E-Value=3)
Length = 255
Score = 25.4 bits (53), Expect = 7.2
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = +1
Query: 67 KHSMPMLSRRRNFKNLAAPYTNDGQENIYT 156
+ + P L RRR + PYT Q N+ T
Sbjct: 46 RKTKPALQRRRQHITMCRPYTEVTQPNVST 75
>SB_35560| Best HMM Match : zf-B_box (HMM E-Value=1e-20)
Length = 470
Score = 25.4 bits (53), Expect = 7.2
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 6/30 (20%)
Frame = +1
Query: 199 SSEDSDVYSICSICET------RLKDAAQF 270
+SEDSD +C +CE+ R D AQF
Sbjct: 87 TSEDSDKKPVCEMCESGETSQGRCNDCAQF 116
>SB_41261| Best HMM Match : Metallothio_11 (HMM E-Value=0.74)
Length = 328
Score = 25.0 bits (52), Expect = 9.5
Identities = 14/59 (23%), Positives = 28/59 (47%), Gaps = 6/59 (10%)
Frame = +1
Query: 28 IRNIFYDDGNLEYKHSMPMLSRRRN------FKNLAAPYTNDGQENIYTVMLKETFDII 186
+R + D L+ +H + S+R ++ + +TN GQEN+ T +T ++
Sbjct: 112 LRPALFVDEELQQEHGLFDFSQRETASSDMYYQGIRMYHTNRGQENVITTQPTQTLPLM 170
>SB_35918| Best HMM Match : Equine_IAV_S2 (HMM E-Value=0.27)
Length = 111
Score = 25.0 bits (52), Expect = 9.5
Identities = 8/24 (33%), Positives = 11/24 (45%)
Frame = -2
Query: 213 TIFTRVWSYNYIKCFFQHYSVYIF 142
T+ VW ++C HY Y F
Sbjct: 27 TLTPNVWKQFMVRCILDHYPTYPF 50
>SB_24840| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 328
Score = 25.0 bits (52), Expect = 9.5
Identities = 14/59 (23%), Positives = 28/59 (47%), Gaps = 6/59 (10%)
Frame = +1
Query: 28 IRNIFYDDGNLEYKHSMPMLSRRRN------FKNLAAPYTNDGQENIYTVMLKETFDII 186
+R + D L+ +H + S+R ++ + +TN GQEN+ T +T ++
Sbjct: 112 LRPALFVDEELQQEHGLFDFSQRETASSDMYYQGIRMYHTNRGQENVITTQPTQTLPLM 170
>SB_20534| Best HMM Match : DUF21 (HMM E-Value=9.8)
Length = 193
Score = 25.0 bits (52), Expect = 9.5
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = -2
Query: 207 FTRVWSYNYIKCFFQHYSVYIFLAVVSIRSS*VFKVPSA*QHRHRVLI 64
FT+V Y + +QHY + + V+I SS + PS +H H LI
Sbjct: 10 FTQVGDYYH----YQHYRHHHLIVTVTITSS--SESPSPHRHHHHHLI 51
>SB_53580| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 940
Score = 25.0 bits (52), Expect = 9.5
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +1
Query: 91 RRRNFKNLAAPYTNDGQENIYTVMLKETFD 180
+R +KN+A Y N+G + + L+E D
Sbjct: 214 KRYGWKNVATVYQNEGLFTLTAIHLREMLD 243
>SB_40773| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 953
Score = 25.0 bits (52), Expect = 9.5
Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Frame = -2
Query: 255 FETSLTYT--TYAVYITIFTRVWSYNYIKCFF 166
F LTYT ++I I + Y+Y KC+F
Sbjct: 749 FNVDLTYTFLVQCLFIAIPMNLILYSYSKCYF 780
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,555,497
Number of Sequences: 59808
Number of extensions: 125240
Number of successful extensions: 337
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 304
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 334
length of database: 16,821,457
effective HSP length: 67
effective length of database: 12,814,321
effective search space used: 294729383
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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