Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_E08
         (501 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31G5.03 |rps1101|rps11-1|40S ribosomal protein S11|Schizosac...   188   4e-49
SPAC144.11 |rps1102|rps11-2, rps11|40S ribosomal protein S11|Sch...   188   4e-49
SPBC409.14c |mrps17||mitochondrial ribosomal protein subunit S17...    32   0.042
SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit Cdc22|...    27   2.1  
SPAC5H10.02c |||ThiJ domain protein|Schizosaccharomyces pombe|ch...    26   3.7  
SPAC4F8.02c |mrpl40|SPAC644.02|mitochondrial ribosomal protein s...    25   6.4  
SPAC23C11.04c |pnk1||DNA kinase/phosphatase Pnk1|Schizosaccharom...    25   6.4  
SPBC887.15c |||sphingosine hydroxylase |Schizosaccharomyces pomb...    25   8.4  
SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase Ubp7|Schizosa...    25   8.4  
SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit ...    25   8.4  
SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces pom...    25   8.4  

>SPAC31G5.03 |rps1101|rps11-1|40S ribosomal protein
           S11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 152

 Score =  188 bits (458), Expect = 4e-49
 Identities = 86/132 (65%), Positives = 105/132 (79%)
 Frame = +3

Query: 15  QTEKAFQKQATVFLNRKGGMKRKDMRHSKNVGLGFKTPREAVEGTYIDKKCPFTGNVSIR 194
           Q+E+AFQKQ  +F N K G  R   R  K+VGLGFKTP EA+ G Y+DKKCPF G VSIR
Sbjct: 8   QSERAFQKQPHIFQNAKKGAGR---RWYKDVGLGFKTPAEAIYGEYVDKKCPFVGQVSIR 64

Query: 195 GRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIG 374
           GRILTG V   KM RTI+IRR+YLH++PKYNR+EKRH+N++ H+SP FR +  GD+VT+G
Sbjct: 65  GRILTGTVVSTKMHRTIIIRREYLHFIPKYNRYEKRHKNLAAHVSPAFR-INEGDVVTVG 123

Query: 375 ECRPLSKTVRFN 410
           +CRPLSKTVRFN
Sbjct: 124 QCRPLSKTVRFN 135


>SPAC144.11 |rps1102|rps11-2, rps11|40S ribosomal protein
           S11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 152

 Score =  188 bits (458), Expect = 4e-49
 Identities = 86/132 (65%), Positives = 105/132 (79%)
 Frame = +3

Query: 15  QTEKAFQKQATVFLNRKGGMKRKDMRHSKNVGLGFKTPREAVEGTYIDKKCPFTGNVSIR 194
           Q+E+AFQKQ  +F N K G  R   R  K+VGLGFKTP EA+ G Y+DKKCPF G VSIR
Sbjct: 8   QSERAFQKQPHIFQNAKKGAGR---RWYKDVGLGFKTPAEAIYGEYVDKKCPFVGQVSIR 64

Query: 195 GRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIG 374
           GRILTG V   KM RTI+IRR+YLH++PKYNR+EKRH+N++ H+SP FR +  GD+VT+G
Sbjct: 65  GRILTGTVVSTKMHRTIIIRREYLHFIPKYNRYEKRHKNLAAHVSPAFR-INEGDVVTVG 123

Query: 375 ECRPLSKTVRFN 410
           +CRPLSKTVRFN
Sbjct: 124 QCRPLSKTVRFN 135


>SPBC409.14c |mrps17||mitochondrial ribosomal protein subunit
           S17|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 90

 Score = 32.3 bits (70), Expect = 0.042
 Identities = 20/66 (30%), Positives = 31/66 (46%)
 Frame = +3

Query: 210 GVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPL 389
           G+V    M +T  +R     + P   ++  +++N  V       +  +GD VTI  CRP 
Sbjct: 7   GIVISRAMPKTAKVRVAKEKFHPVVKKYVTQYQNYMVQDD---LNCNVGDAVTIQPCRPR 63

Query: 390 SKTVRF 407
           S T RF
Sbjct: 64  SATKRF 69


>SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit
           Cdc22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 811

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 13/22 (59%), Positives = 15/22 (68%)
 Frame = -2

Query: 362 DVSDFHVPEARR*MNRHVPVSL 297
           DV+ + VPEARR   RH PV L
Sbjct: 481 DVNYYPVPEARRSNMRHRPVGL 502


>SPAC5H10.02c |||ThiJ domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 240

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 21/63 (33%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
 Frame = +3

Query: 30  FQKQATVFLNRKGGMKRKDMRHSKNVGLGFKTPREAVEG-TYIDKKCPFTGNVSIRGRIL 206
           + K  T F N+ G  K   M   K  G+       A  G T+ID   P      I G+I+
Sbjct: 163 YHKHVTAF-NKAGEEKMGVMDELKKRGMKSLNEIFAEAGATFIDPPNPNVNFTQIDGKIV 221

Query: 207 TGV 215
           TGV
Sbjct: 222 TGV 224


>SPAC4F8.02c |mrpl40|SPAC644.02|mitochondrial ribosomal protein
           subunit L40|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 279

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -2

Query: 110 TNILRMSHILPFHAPLAIEEH 48
           TN+L+M   LP H    I EH
Sbjct: 16  TNVLKMKKPLPLHMRTKIREH 36


>SPAC23C11.04c |pnk1||DNA kinase/phosphatase
           Pnk1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 421

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = +3

Query: 60  RKGGMKRKDMRHSKNVGLGFKTPRE 134
           R G     D++ ++N+G+ F+TP +
Sbjct: 194 RPGDHNSTDLKFAENIGIKFETPEQ 218


>SPBC887.15c |||sphingosine hydroxylase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 293

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 10/30 (33%), Positives = 20/30 (66%)
 Frame = -2

Query: 347 HVPEARR*MNRHVPVSLLKSVVFRQVMEII 258
           H PE     NR   ++++K+V+F+Q+ E++
Sbjct: 49  HPPEEIARRNRVPQMAVVKAVLFQQLCEVV 78


>SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase
           Ubp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 875

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = -3

Query: 157 SMYVPSTASRGVLKPRPTFLECLISFLFMPPLRLRNTVAC 38
           S++  S+ S  +++   T ++CL +F  +  L   N  AC
Sbjct: 658 SIFSESSLSSPIIEEPKTLIDCLKNFTHVEELSGENMFAC 697


>SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit
           Pmc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 879

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 7/51 (13%)
 Frame = -2

Query: 317 RHVPVSLLKSVVFRQVMEIIAPDNNCSLHF-------HFLNNACQDTASDG 186
           +HV  + L    FR     I  DN  +LHF       H ++   QDT SDG
Sbjct: 699 KHVDFTYLDDEKFRAT---IHDDNTFTLHFFNRHSPFHLISQFLQDTFSDG 746


>SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 910

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -3

Query: 409 LNLTVLESGLHSPIVTMSPISTSLKQGDR*TDMFLCRFSN 290
           L+ + +   L SP+ T++  +  L  G    D+FL  FSN
Sbjct: 6   LHESAIPKELDSPVTTIALYNNHLYFGTEGGDVFLYNFSN 45


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,946,198
Number of Sequences: 5004
Number of extensions: 40924
Number of successful extensions: 130
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 198176188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)