Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_E08
         (501 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26249| Best HMM Match : No HMM Matches (HMM E-Value=.)             215   2e-56
SB_17063| Best HMM Match : Ribosomal_S17 (HMM E-Value=5.7e-06)         32   0.23 
SB_48102| Best HMM Match : Ribosomal_S17 (HMM E-Value=4.2e-34)         31   0.53 
SB_32917| Best HMM Match : Pro_isomerase (HMM E-Value=5.1e-23)         28   3.8  
SB_37813| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.0  
SB_15022| Best HMM Match : Zona_pellucida (HMM E-Value=5.6e-38)        28   5.0  
SB_9863| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   6.6  
SB_5842| Best HMM Match : WD40 (HMM E-Value=6.7e-21)                   27   8.7  

>SB_26249| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 171

 Score =  215 bits (524), Expect = 2e-56
 Identities = 99/150 (66%), Positives = 122/150 (81%), Gaps = 16/150 (10%)
 Frame = +3

Query: 9   ADQTEKAFQKQATVFLNRKGGM----KRKDMRHSKNVGLGFKTP------------REAV 140
           A+QTE+A+QKQA +F NRK  +    K+KD+R  +NVGLGFKTP            REA+
Sbjct: 2   AEQTERAYQKQAPIFQNRKRVLGQVTKKKDLRFVRNVGLGFKTPKDVCNCTYLLPEREAI 61

Query: 141 EGTYIDKKCPFTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSV 320
           EGTYIDKKCPFTGNVSIRGRILTG+ + MKM+RTI+IRRDYLHY+ KYNRFEKRH+N++ 
Sbjct: 62  EGTYIDKKCPFTGNVSIRGRILTGICRSMKMKRTIIIRRDYLHYIKKYNRFEKRHKNLAA 121

Query: 321 HLSPCFRDVEIGDIVTIGECRPLSKTVRFN 410
           H SPCFRD+ +GD++T+G+CRPLSKTVRFN
Sbjct: 122 HCSPCFRDIALGDLITVGQCRPLSKTVRFN 151


>SB_17063| Best HMM Match : Ribosomal_S17 (HMM E-Value=5.7e-06)
          Length = 73

 Score = 32.3 bits (70), Expect = 0.23
 Identities = 13/19 (68%), Positives = 15/19 (78%)
 Frame = +3

Query: 354 GDIVTIGECRPLSKTVRFN 410
           GD+V I ECRPLSK  +FN
Sbjct: 29  GDVVRIKECRPLSKMKKFN 47


>SB_48102| Best HMM Match : Ribosomal_S17 (HMM E-Value=4.2e-34)
          Length = 208

 Score = 31.1 bits (67), Expect = 0.53
 Identities = 22/78 (28%), Positives = 35/78 (44%)
 Frame = +3

Query: 174 TGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEI 353
           T   + R ++  G+V   KM +TI +  +     P Y +   +   +  H      +  +
Sbjct: 5   TAERTTRRKVREGLVVSDKMNKTITVMVEDRVKHPLYGKVMTKSVRLKAHDEN--NEAGM 62

Query: 354 GDIVTIGECRPLSKTVRF 407
           GD V I E RPLS T R+
Sbjct: 63  GDRVRIMETRPLSATKRW 80


>SB_32917| Best HMM Match : Pro_isomerase (HMM E-Value=5.1e-23)
          Length = 378

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
 Frame = +3

Query: 24  KAFQKQATVFLNRKGGMKRKDMRHSKNVGLGFKTPREAVEGTYIDKK-CPFTGNVSIRGR 200
           +A   + T  ++RK   K+K+ +  KN+    K PR     T++  +     G V++R R
Sbjct: 216 QALAMKVTSRVSRKIDSKKKNKQRRKNLRALRKAPRRPAPVTHLSARGADVDGAVALRAR 275

Query: 201 ILTGVVQK 224
              G  Q+
Sbjct: 276 ARAGNAQR 283


>SB_37813| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 450

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -2

Query: 281 FRQVMEIIAPDNNCSLHFHFLNNA 210
           F+++   ++PD  CS++F F N A
Sbjct: 197 FQEIWTTVSPDGICSVNFEFYNGA 220


>SB_15022| Best HMM Match : Zona_pellucida (HMM E-Value=5.6e-38)
          Length = 525

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = +3

Query: 201 ILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCF 338
           I+  VV K K  +  VI RD+  Y     ++ +R     VH SP F
Sbjct: 64  IMNKVVPKEKEDKNKVITRDHQAYFAFSCKYHRRMVLTVVHFSPSF 109


>SB_9863| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 639

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +2

Query: 62  QGGHEKEGYETF*ECWS 112
           QGGH+  G + F ECWS
Sbjct: 44  QGGHKYVGIQFFAECWS 60


>SB_5842| Best HMM Match : WD40 (HMM E-Value=6.7e-21)
          Length = 759

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = +1

Query: 271 TCLNTTDLRSDTGTCLFIYRLASGTWKSETSSQLASAG 384
           TC+ +   RS  GTC+   R  SG     TS +  S G
Sbjct: 572 TCVTSIRCRSGEGTCVTSIRCRSGEGTCVTSIRCRSGG 609


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,211,250
Number of Sequences: 59808
Number of extensions: 337155
Number of successful extensions: 822
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 712
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 819
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1087245449
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)