Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_E08
         (501 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X06617-1|CAA29834.1|  158|Homo sapiens protein ( Human mRNA for ...   235   8e-62
BC100025-1|AAI00026.1|  158|Homo sapiens RPS11 protein protein.       235   8e-62
BC070224-1|AAH70224.1|  158|Homo sapiens ribosomal protein S11 p...   235   8e-62
BC016378-1|AAH16378.1|  158|Homo sapiens ribosomal protein S11 p...   235   8e-62
BC010028-1|AAH10028.1|  158|Homo sapiens ribosomal protein S11 p...   235   8e-62
BC007945-1|AAH07945.1|  158|Homo sapiens RPS11 protein protein.       235   8e-62
BC007603-1|AAH07603.1|  158|Homo sapiens ribosomal protein S11 p...   235   8e-62
BC007283-1|AAH07283.1|  158|Homo sapiens ribosomal protein S11 p...   235   8e-62
AB028893-2|BAA88215.1|  158|Homo sapiens ribosomal protein S11 p...   235   8e-62
AB007152-1|BAA25818.1|   83|Homo sapiens ribosomal protein S11 p...   137   2e-32
U52144-1|AAC50455.1|  419|Homo sapiens isocitrate dehydrogenase ...    42   0.001
BC107593-1|AAI07594.1|  503|Homo sapiens FMN1 protein protein.         29   9.1  
BC103692-1|AAI03693.1|  503|Homo sapiens FMN1 protein protein.         29   9.1  
AK127078-1|BAC86815.1|  844|Homo sapiens protein ( Homo sapiens ...    29   9.1  

>X06617-1|CAA29834.1|  158|Homo sapiens protein ( Human mRNA for
           ribosomal protein S11. ).
          Length = 158

 Score =  235 bits (574), Expect = 8e-62
 Identities = 111/153 (72%), Positives = 125/153 (81%), Gaps = 5/153 (3%)
 Frame = +3

Query: 15  QTEKAFQKQATVFLNRKGGM-----KRKDMRHSKNVGLGFKTPREAVEGTYIDKKCPFTG 179
           QTE+A+QKQ T+F N+K  +     K K  R+ KN+GLGFKTP+EA+EGTYIDKKCPFTG
Sbjct: 5   QTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKCPFTG 64

Query: 180 NVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGD 359
           NVSIRGRIL+GVV KMKMQRTIVIRRDYLHY+ KYNRFEKRH+NMSVHLSPCFRDV+IGD
Sbjct: 65  NVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDVQIGD 124

Query: 360 IVTIGECRPLSKTVRFNXXXXXXXXXXXXIFQK 458
           IVT+GECRPLSKTVRFN             FQK
Sbjct: 125 IVTVGECRPLSKTVRFNVLKVTKAAGTKKQFQK 157


>BC100025-1|AAI00026.1|  158|Homo sapiens RPS11 protein protein.
          Length = 158

 Score =  235 bits (574), Expect = 8e-62
 Identities = 111/153 (72%), Positives = 125/153 (81%), Gaps = 5/153 (3%)
 Frame = +3

Query: 15  QTEKAFQKQATVFLNRKGGM-----KRKDMRHSKNVGLGFKTPREAVEGTYIDKKCPFTG 179
           QTE+A+QKQ T+F N+K  +     K K  R+ KN+GLGFKTP+EA+EGTYIDKKCPFTG
Sbjct: 5   QTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKCPFTG 64

Query: 180 NVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGD 359
           NVSIRGRIL+GVV KMKMQRTIVIRRDYLHY+ KYNRFEKRH+NMSVHLSPCFRDV+IGD
Sbjct: 65  NVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDVQIGD 124

Query: 360 IVTIGECRPLSKTVRFNXXXXXXXXXXXXIFQK 458
           IVT+GECRPLSKTVRFN             FQK
Sbjct: 125 IVTVGECRPLSKTVRFNVLKVTKAAGTKKQFQK 157


>BC070224-1|AAH70224.1|  158|Homo sapiens ribosomal protein S11
           protein.
          Length = 158

 Score =  235 bits (574), Expect = 8e-62
 Identities = 111/153 (72%), Positives = 125/153 (81%), Gaps = 5/153 (3%)
 Frame = +3

Query: 15  QTEKAFQKQATVFLNRKGGM-----KRKDMRHSKNVGLGFKTPREAVEGTYIDKKCPFTG 179
           QTE+A+QKQ T+F N+K  +     K K  R+ KN+GLGFKTP+EA+EGTYIDKKCPFTG
Sbjct: 5   QTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKCPFTG 64

Query: 180 NVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGD 359
           NVSIRGRIL+GVV KMKMQRTIVIRRDYLHY+ KYNRFEKRH+NMSVHLSPCFRDV+IGD
Sbjct: 65  NVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDVQIGD 124

Query: 360 IVTIGECRPLSKTVRFNXXXXXXXXXXXXIFQK 458
           IVT+GECRPLSKTVRFN             FQK
Sbjct: 125 IVTVGECRPLSKTVRFNVLKVTKAAGTKKQFQK 157


>BC016378-1|AAH16378.1|  158|Homo sapiens ribosomal protein S11
           protein.
          Length = 158

 Score =  235 bits (574), Expect = 8e-62
 Identities = 111/153 (72%), Positives = 125/153 (81%), Gaps = 5/153 (3%)
 Frame = +3

Query: 15  QTEKAFQKQATVFLNRKGGM-----KRKDMRHSKNVGLGFKTPREAVEGTYIDKKCPFTG 179
           QTE+A+QKQ T+F N+K  +     K K  R+ KN+GLGFKTP+EA+EGTYIDKKCPFTG
Sbjct: 5   QTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKCPFTG 64

Query: 180 NVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGD 359
           NVSIRGRIL+GVV KMKMQRTIVIRRDYLHY+ KYNRFEKRH+NMSVHLSPCFRDV+IGD
Sbjct: 65  NVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDVQIGD 124

Query: 360 IVTIGECRPLSKTVRFNXXXXXXXXXXXXIFQK 458
           IVT+GECRPLSKTVRFN             FQK
Sbjct: 125 IVTVGECRPLSKTVRFNVLKVTKAAGTKKQFQK 157


>BC010028-1|AAH10028.1|  158|Homo sapiens ribosomal protein S11
           protein.
          Length = 158

 Score =  235 bits (574), Expect = 8e-62
 Identities = 111/153 (72%), Positives = 125/153 (81%), Gaps = 5/153 (3%)
 Frame = +3

Query: 15  QTEKAFQKQATVFLNRKGGM-----KRKDMRHSKNVGLGFKTPREAVEGTYIDKKCPFTG 179
           QTE+A+QKQ T+F N+K  +     K K  R+ KN+GLGFKTP+EA+EGTYIDKKCPFTG
Sbjct: 5   QTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKCPFTG 64

Query: 180 NVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGD 359
           NVSIRGRIL+GVV KMKMQRTIVIRRDYLHY+ KYNRFEKRH+NMSVHLSPCFRDV+IGD
Sbjct: 65  NVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDVQIGD 124

Query: 360 IVTIGECRPLSKTVRFNXXXXXXXXXXXXIFQK 458
           IVT+GECRPLSKTVRFN             FQK
Sbjct: 125 IVTVGECRPLSKTVRFNVLKVTKAAGTKKQFQK 157


>BC007945-1|AAH07945.1|  158|Homo sapiens RPS11 protein protein.
          Length = 158

 Score =  235 bits (574), Expect = 8e-62
 Identities = 111/153 (72%), Positives = 125/153 (81%), Gaps = 5/153 (3%)
 Frame = +3

Query: 15  QTEKAFQKQATVFLNRKGGM-----KRKDMRHSKNVGLGFKTPREAVEGTYIDKKCPFTG 179
           QTE+A+QKQ T+F N+K  +     K K  R+ KN+GLGFKTP+EA+EGTYIDKKCPFTG
Sbjct: 5   QTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKCPFTG 64

Query: 180 NVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGD 359
           NVSIRGRIL+GVV KMKMQRTIVIRRDYLHY+ KYNRFEKRH+NMSVHLSPCFRDV+IGD
Sbjct: 65  NVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDVQIGD 124

Query: 360 IVTIGECRPLSKTVRFNXXXXXXXXXXXXIFQK 458
           IVT+GECRPLSKTVRFN             FQK
Sbjct: 125 IVTVGECRPLSKTVRFNVLKVTKAAGTKKQFQK 157


>BC007603-1|AAH07603.1|  158|Homo sapiens ribosomal protein S11
           protein.
          Length = 158

 Score =  235 bits (574), Expect = 8e-62
 Identities = 111/153 (72%), Positives = 125/153 (81%), Gaps = 5/153 (3%)
 Frame = +3

Query: 15  QTEKAFQKQATVFLNRKGGM-----KRKDMRHSKNVGLGFKTPREAVEGTYIDKKCPFTG 179
           QTE+A+QKQ T+F N+K  +     K K  R+ KN+GLGFKTP+EA+EGTYIDKKCPFTG
Sbjct: 5   QTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKCPFTG 64

Query: 180 NVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGD 359
           NVSIRGRIL+GVV KMKMQRTIVIRRDYLHY+ KYNRFEKRH+NMSVHLSPCFRDV+IGD
Sbjct: 65  NVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDVQIGD 124

Query: 360 IVTIGECRPLSKTVRFNXXXXXXXXXXXXIFQK 458
           IVT+GECRPLSKTVRFN             FQK
Sbjct: 125 IVTVGECRPLSKTVRFNVLKVTKAAGTKKQFQK 157


>BC007283-1|AAH07283.1|  158|Homo sapiens ribosomal protein S11
           protein.
          Length = 158

 Score =  235 bits (574), Expect = 8e-62
 Identities = 111/153 (72%), Positives = 125/153 (81%), Gaps = 5/153 (3%)
 Frame = +3

Query: 15  QTEKAFQKQATVFLNRKGGM-----KRKDMRHSKNVGLGFKTPREAVEGTYIDKKCPFTG 179
           QTE+A+QKQ T+F N+K  +     K K  R+ KN+GLGFKTP+EA+EGTYIDKKCPFTG
Sbjct: 5   QTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKCPFTG 64

Query: 180 NVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGD 359
           NVSIRGRIL+GVV KMKMQRTIVIRRDYLHY+ KYNRFEKRH+NMSVHLSPCFRDV+IGD
Sbjct: 65  NVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDVQIGD 124

Query: 360 IVTIGECRPLSKTVRFNXXXXXXXXXXXXIFQK 458
           IVT+GECRPLSKTVRFN             FQK
Sbjct: 125 IVTVGECRPLSKTVRFNVLKVTKAAGTKKQFQK 157


>AB028893-2|BAA88215.1|  158|Homo sapiens ribosomal protein S11
           protein.
          Length = 158

 Score =  235 bits (574), Expect = 8e-62
 Identities = 111/153 (72%), Positives = 125/153 (81%), Gaps = 5/153 (3%)
 Frame = +3

Query: 15  QTEKAFQKQATVFLNRKGGM-----KRKDMRHSKNVGLGFKTPREAVEGTYIDKKCPFTG 179
           QTE+A+QKQ T+F N+K  +     K K  R+ KN+GLGFKTP+EA+EGTYIDKKCPFTG
Sbjct: 5   QTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKCPFTG 64

Query: 180 NVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGD 359
           NVSIRGRIL+GVV KMKMQRTIVIRRDYLHY+ KYNRFEKRH+NMSVHLSPCFRDV+IGD
Sbjct: 65  NVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDVQIGD 124

Query: 360 IVTIGECRPLSKTVRFNXXXXXXXXXXXXIFQK 458
           IVT+GECRPLSKTVRFN             FQK
Sbjct: 125 IVTVGECRPLSKTVRFNVLKVTKAAGTKKQFQK 157


>AB007152-1|BAA25818.1|   83|Homo sapiens ribosomal protein S11
           protein.
          Length = 83

 Score =  137 bits (332), Expect = 2e-32
 Identities = 63/82 (76%), Positives = 67/82 (81%)
 Frame = +3

Query: 213 VVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPLS 392
           VV KMKMQRTIVIRRDYLHY+ KYNRFEKRH+NMSVHLSPCFRDV+IGDIVT+GECRPLS
Sbjct: 1   VVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDVQIGDIVTVGECRPLS 60

Query: 393 KTVRFNXXXXXXXXXXXXIFQK 458
           KTVRFN             FQK
Sbjct: 61  KTVRFNVLKVTKAAGTKKQFQK 82


>U52144-1|AAC50455.1|  419|Homo sapiens isocitrate dehydrogenase
           protein.
          Length = 419

 Score = 41.9 bits (94), Expect = 0.001
 Identities = 16/27 (59%), Positives = 22/27 (81%)
 Frame = -2

Query: 422 DLQYIEPDCLGKRPALANCDDVSDFHV 342
           DL+++E  CL +RPALA+CDDV+D  V
Sbjct: 18  DLEHVEAHCLAQRPALAHCDDVTDLDV 44


>BC107593-1|AAI07594.1|  503|Homo sapiens FMN1 protein protein.
          Length = 503

 Score = 29.1 bits (62), Expect = 9.1
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +2

Query: 5   EGGSDRESVSETGDGVPQSQGGHEK 79
           E G + +  S++G GVPQ+QGG  K
Sbjct: 370 EMGCNADQESQSGPGVPQTQGGEVK 394


>BC103692-1|AAI03693.1|  503|Homo sapiens FMN1 protein protein.
          Length = 503

 Score = 29.1 bits (62), Expect = 9.1
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +2

Query: 5   EGGSDRESVSETGDGVPQSQGGHEK 79
           E G + +  S++G GVPQ+QGG  K
Sbjct: 370 EMGCNADQESQSGPGVPQTQGGEVK 394


>AK127078-1|BAC86815.1|  844|Homo sapiens protein ( Homo sapiens
          cDNA FLJ45135 fis, clone BRAWH3038252, highly  similar
          to Formin 1 isoform IV. ).
          Length = 844

 Score = 29.1 bits (62), Expect = 9.1
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +2

Query: 5  EGGSDRESVSETGDGVPQSQGGHEK 79
          E G + +  S++G GVPQ+QGG  K
Sbjct: 18 EMGCNADQESQSGPGVPQTQGGEVK 42


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 68,577,388
Number of Sequences: 237096
Number of extensions: 1552632
Number of successful extensions: 6978
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 6884
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6969
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4593178062
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)