Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_E08
         (501 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g30800.1 68417.m04363 40S ribosomal protein S11 (RPS11B) ribo...   192   1e-49
At3g48930.1 68416.m05345 40S ribosomal protein S11 (RPS11A)           187   4e-48
At5g23740.1 68418.m02784 40S ribosomal protein S11 (RPS11C)           183   5e-47
At1g49400.1 68414.m05537 ribosomal protein S17 family protein si...    38   0.005
At3g18880.1 68416.m02398 ribosomal protein S17 family protein si...    37   0.009
At1g79850.1 68414.m09328 30S ribosomal protein S17, chloroplast ...    30   1.0  
At5g11940.1 68418.m01396 subtilase family protein contains simil...    28   3.1  
At4g12390.1 68417.m01958 invertase/pectin methylesterase inhibit...    27   5.4  
At4g26980.1 68417.m03882 expressed protein                             27   7.1  
At4g35720.1 68417.m05069 expressed protein contains Pfam profile...    27   9.4  

>At4g30800.1 68417.m04363 40S ribosomal protein S11 (RPS11B)
           ribosomal protein S11, Arabidopsis thaliana,PIR2:C35542
          Length = 159

 Score =  192 bits (468), Expect = 1e-49
 Identities = 93/139 (66%), Positives = 108/139 (77%), Gaps = 5/139 (3%)
 Frame = +3

Query: 9   ADQTEKAFQKQATVFLNRKGGMKRK-----DMRHSKNVGLGFKTPREAVEGTYIDKKCPF 173
           A+QTEKAF KQ  VFL+ K   K K       R  KN+GLGFKTPREA+EGTYID+KCPF
Sbjct: 2   AEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKNIGLGFKTPREAIEGTYIDQKCPF 61

Query: 174 TGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEI 353
           TG VSIRGRIL+G     KMQRTI++RRDYLH++ KY R+EKRH N+  H+SPCFR V+ 
Sbjct: 62  TGTVSIRGRILSGTCHSAKMQRTIIVRRDYLHFVKKYRRYEKRHSNIPAHVSPCFR-VKE 120

Query: 354 GDIVTIGECRPLSKTVRFN 410
           GD VTIG+CRPLSKTVRFN
Sbjct: 121 GDRVTIGQCRPLSKTVRFN 139


>At3g48930.1 68416.m05345 40S ribosomal protein S11 (RPS11A)
          Length = 160

 Score =  187 bits (455), Expect = 4e-48
 Identities = 89/139 (64%), Positives = 105/139 (75%), Gaps = 5/139 (3%)
 Frame = +3

Query: 9   ADQTEKAFQKQATVFLNRKGGMKRK-----DMRHSKNVGLGFKTPREAVEGTYIDKKCPF 173
           A+QTEKAF KQ  VFL+ K   K K       R  KN+GLGFKTPREA++G Y+DKKCPF
Sbjct: 2   AEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKNIGLGFKTPREAIDGAYVDKKCPF 61

Query: 174 TGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEI 353
           TG VSIRGRIL G     KMQRTI++RRDYLH++ KY R+EKRH N+  H+SPCFR V+ 
Sbjct: 62  TGTVSIRGRILAGTCHSAKMQRTIIVRRDYLHFVKKYQRYEKRHSNIPAHVSPCFR-VKE 120

Query: 354 GDIVTIGECRPLSKTVRFN 410
           GD + IG+CRPLSKTVRFN
Sbjct: 121 GDHIIIGQCRPLSKTVRFN 139


>At5g23740.1 68418.m02784 40S ribosomal protein S11 (RPS11C)
          Length = 159

 Score =  183 bits (446), Expect = 5e-47
 Identities = 90/139 (64%), Positives = 105/139 (75%), Gaps = 5/139 (3%)
 Frame = +3

Query: 9   ADQTEKAFQKQATVFLNRK--GGMKRKDM---RHSKNVGLGFKTPREAVEGTYIDKKCPF 173
           A+QTEKAF KQ  VFL+ K  G  KR      R  KN+GLGFKTPREA++G YID KCPF
Sbjct: 2   AEQTEKAFLKQPKVFLSSKISGKGKRPGKGGNRFWKNIGLGFKTPREAIDGAYIDSKCPF 61

Query: 174 TGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEI 353
           TG VSIRGRIL G     KMQRTI++RR+YLH++ KY R+EKRH N+  H+SPCFR V+ 
Sbjct: 62  TGTVSIRGRILAGTCHSAKMQRTIIVRRNYLHFVKKYQRYEKRHSNIPAHVSPCFR-VKE 120

Query: 354 GDIVTIGECRPLSKTVRFN 410
           GD V IG+CRPLSKTVRFN
Sbjct: 121 GDHVIIGQCRPLSKTVRFN 139


>At1g49400.1 68414.m05537 ribosomal protein S17 family protein
           similar to 40S ribosomal protein S17 GI:1620985 from
           [Nicotiana plumbaginifolia]
          Length = 116

 Score = 37.5 bits (83), Expect = 0.005
 Identities = 24/63 (38%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
 Frame = +3

Query: 210 GVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDV-EIGDIVTIGECRP 386
           G V   KMQ+++V+  D L +   YNR+ KR      H     +D   IGD V +   RP
Sbjct: 6   GTVVSNKMQKSVVVAVDRLFHNKIYNRYVKRTSKFMAHDD---KDACNIGDRVKLDPSRP 62

Query: 387 LSK 395
           LSK
Sbjct: 63  LSK 65


>At3g18880.1 68416.m02398 ribosomal protein S17 family protein
           similar to 40S ribosomal protein S17 GB:Y08858 from
           [Nicotiana plumbaginifolia]
          Length = 105

 Score = 36.7 bits (81), Expect = 0.009
 Identities = 23/66 (34%), Positives = 31/66 (46%)
 Frame = +3

Query: 198 RILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGE 377
           + + G V   KMQ ++V+  D L +   YNR+ KR      H         IGD V +  
Sbjct: 2   KAVIGTVVSNKMQMSVVVAVDRLFHNNIYNRYVKRTSKFMAHDEK--DSCNIGDRVKLDP 59

Query: 378 CRPLSK 395
            RPLSK
Sbjct: 60  SRPLSK 65


>At1g79850.1 68414.m09328 30S ribosomal protein S17, chloroplast /
           CS17 (RPS17) identical to 30S ribosomal protein S17,
           chloroplast precursor GB:P16180 [Arabidopsis thaliana]
          Length = 149

 Score = 29.9 bits (64), Expect = 1.0
 Identities = 19/70 (27%), Positives = 32/70 (45%)
 Frame = +3

Query: 198 RILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGE 377
           + + G V      +T+ +    L   PKY R  +  +    H  P     ++GD+V + +
Sbjct: 51  KTMQGRVVCATSDKTVAVEVVRLAPHPKYKRRVRMKKKYQAH-DPD-NQFKVGDVVRLEK 108

Query: 378 CRPLSKTVRF 407
            RP+SKT  F
Sbjct: 109 SRPISKTKSF 118


>At5g11940.1 68418.m01396 subtilase family protein contains
           similarity to subtilase; SP1 GI:9957714 from [Oryza
           sativa]
          Length = 762

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +2

Query: 8   GGSDRESVSETGDGVPQSQGGHEKEGYETF*ECWSRFQDT 127
           GGS   +VS+ G GV   +GG  +     +  CW R   T
Sbjct: 235 GGSFVSNVSDNGFGVGTIRGGAPRARIAVYKVCWQRVDRT 274


>At4g12390.1 68417.m01958 invertase/pectin methylesterase inhibitor
           family protein low similarity to pectinesterase from
           Arabidopsis thaliana SP|Q42534, Lycopersicon esculentum
           SP|Q43143; contains Pfam profile PF04043: Plant
           invertase/pectin methylesterase inhibitor
          Length = 206

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +3

Query: 195 GRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRN 311
           G+++ GVV+    +R + + R   + L   NRF  RH++
Sbjct: 168 GKVMDGVVKSAIRRRVVHVARVTSNALALVNRFAARHKS 206


>At4g26980.1 68417.m03882 expressed protein 
          Length = 343

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = +3

Query: 120 KTPREAVEGTYIDKKCPFTGNVSIRGRILTGVVQK 224
           + PREA+    +D+  PF  ++  +  ++TGVVQK
Sbjct: 242 EVPREALPDVALDE--PFVKDIDPKTWVVTGVVQK 274


>At4g35720.1 68417.m05069 expressed protein contains Pfam profile
           PF03087: Arabidopsis protein of unknown function
          Length = 325

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = +3

Query: 51  FLNRKGGMKRKDMRHSKNVGLGFKTPREAVEGTYIDKKCPFTG 179
           FL+   G+K K+  H K  G+  K  ++ +E  + +K+   TG
Sbjct: 203 FLSSPKGLKTKNHHHHKGWGIVMKLVKKGIEHHHQEKRDYETG 245


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,392,633
Number of Sequences: 28952
Number of extensions: 226280
Number of successful extensions: 578
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 560
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 572
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 888318720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)