Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_E07
(309 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC613.06 |rpl902|rpl9-2|60S ribosomal protein L9|Schizosacchar... 109 1e-25
SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein L9|Schizosaccha... 108 2e-25
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac... 27 0.64
SPAC323.05c |||S-adenosylmethionine-dependent methyltransferase ... 27 0.64
SPAC6C3.06c |||P-type ATPase, calcium transporting|Schizosacchar... 26 1.1
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom... 25 2.6
SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large... 25 3.4
SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces pombe... 25 3.4
SPCC1753.05 |rsm1||RNA export factor Rsm1|Schizosaccharomyces po... 25 3.4
SPCC4E9.02 |cig1|SPCC645.01|cyclin Cig1|Schizosaccharomyces pomb... 24 4.5
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr... 24 4.5
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc... 24 4.5
SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces ... 24 5.9
SPBC2G2.16 |||mannose-6-phosphate isomerase |Schizosaccharomyces... 24 5.9
SPAC6G10.06 |||amino acid oxidase |Schizosaccharomyces pombe|chr... 24 5.9
SPBC1271.14 |||glutamate N-acetyltransferase |Schizosaccharomyce... 24 5.9
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc... 23 7.9
>SPCC613.06 |rpl902|rpl9-2|60S ribosomal protein
L9|Schizosaccharomyces pombe|chr 3|||Manual
Length = 189
Score = 109 bits (261), Expect = 1e-25
Identities = 54/87 (62%), Positives = 65/87 (74%)
Frame = -1
Query: 309 INCVTTEGNTIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAAL 130
IN TE T++EIRNFLGE+ R +K PGVTV S KDE+IIEGNSLE+VS SAA
Sbjct: 99 ININLTENGTVVEIRNFLGERITRVIKCLPGVTVSISSAVKDEIIIEGNSLENVSQSAAN 158
Query: 129 IQQSTTVKNKDIRKFLDGLYVSEKTTV 49
I+Q V+NKDIRKFLDG+YVSE+ +
Sbjct: 159 IKQICNVRNKDIRKFLDGIYVSERGNI 185
>SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein
L9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 190
Score = 108 bits (259), Expect = 2e-25
Identities = 53/87 (60%), Positives = 65/87 (74%)
Frame = -1
Query: 309 INCVTTEGNTIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAAL 130
IN TE T++EIRNFLGE+ R +K PGVTV S KDE+I+EGNSLE+VS SAA
Sbjct: 99 ININLTENGTVVEIRNFLGERITRVIKCLPGVTVSISSAVKDEIILEGNSLENVSQSAAN 158
Query: 129 IQQSTTVKNKDIRKFLDGLYVSEKTTV 49
I+Q V+NKDIRKFLDG+YVSE+ +
Sbjct: 159 IKQICNVRNKDIRKFLDGIYVSERGNI 185
>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
Smc6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1140
Score = 27.1 bits (57), Expect = 0.64
Identities = 11/29 (37%), Positives = 21/29 (72%)
Frame = -1
Query: 204 NSPKQKDELIIEGNSLEDVSSSAALIQQS 118
+SPK+K +L ++G L+ + + +LI+QS
Sbjct: 249 SSPKEKYQLFMKGIQLKQLEENYSLIEQS 277
>SPAC323.05c |||S-adenosylmethionine-dependent methyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 231
Score = 27.1 bits (57), Expect = 0.64
Identities = 10/36 (27%), Positives = 24/36 (66%)
Frame = -1
Query: 159 LEDVSSSAALIQQSTTVKNKDIRKFLDGLYVSEKTT 52
+ D+S+SA + T + N+++ K +GL+++ +T+
Sbjct: 78 MSDISNSACRASKITALNNRELYKDDNGLFITVQTS 113
>SPAC6C3.06c |||P-type ATPase, calcium
transporting|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1033
Score = 26.2 bits (55), Expect = 1.1
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = -3
Query: 193 TKG*TDHRRKLIRRCIQ-FSCPDPTINDSKEQGYQKVLGRSLC 68
T G + +++ CIQ +S P P DSK VL SLC
Sbjct: 427 TMGFSAESMDVVQACIQNYSTPIPLSEDSKTLVRNLVLALSLC 469
>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1692
Score = 25.0 bits (52), Expect = 2.6
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +2
Query: 155 SNEFPSMISSSFCLGELTTVTPGAIFTLLMYF 250
SN + I SFC LTT+ P ++ L+YF
Sbjct: 635 SNPSATFIDFSFC--PLTTIDPAFSYSNLVYF 664
>SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large
subunit Rpc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1405
Score = 24.6 bits (51), Expect = 3.4
Identities = 10/37 (27%), Positives = 20/37 (54%)
Frame = -1
Query: 213 TVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTVKN 103
+V+N K EL +EG L+ V ++ ++ T+ +
Sbjct: 1228 SVINQESGKIELFMEGTGLQAVMNTEGIVGTKTSTNH 1264
>SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 426
Score = 24.6 bits (51), Expect = 3.4
Identities = 10/32 (31%), Positives = 16/32 (50%)
Frame = +1
Query: 19 YLMVLYLICYNSRLLRYIETVQELSDILVLYC 114
Y V +L YN ++ E +E+ + LYC
Sbjct: 50 YSSVSFLSVYNEKIGSIFEPFREIYEAFALYC 81
>SPCC1753.05 |rsm1||RNA export factor Rsm1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 296
Score = 24.6 bits (51), Expect = 3.4
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = +1
Query: 205 DNCHTRCHFYPPDV 246
DNC R H +PPD+
Sbjct: 128 DNCLWRLHKFPPDI 141
>SPCC4E9.02 |cig1|SPCC645.01|cyclin Cig1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 415
Score = 24.2 bits (50), Expect = 4.5
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -1
Query: 225 APGVTVVNSPKQKDELIIEGNSLEDVSSS 139
AP V N +Q + +IEGN+ +SSS
Sbjct: 40 APFKAVDNINQQDEPTLIEGNNESSISSS 68
>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1471
Score = 24.2 bits (50), Expect = 4.5
Identities = 14/64 (21%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
Frame = -1
Query: 267 RNFLGEKYIRRVKMAPGVTVVNSPKQKD---ELIIEGNSLEDVSSSAALIQQSTTVKNKD 97
R+ L +Y+RR++ + G T + KQK+ + L+ S +++ + N
Sbjct: 883 RSVLTRRYLRRLQDSAGRTSILYEKQKNLQASITEVSKQLKSNSKKVTVLRNKLNILNNS 942
Query: 96 IRKF 85
+ K+
Sbjct: 943 LSKW 946
>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1238
Score = 24.2 bits (50), Expect = 4.5
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +2
Query: 140 ELDTSSNEFPSMISSSFCLGELTTVTPGAI 229
EL TS+ PS S CL E+ T+ PG +
Sbjct: 654 ELLTSTFLSPSA-ESQVCLAEIKTIRPGLV 682
>SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 407
Score = 23.8 bits (49), Expect = 5.9
Identities = 13/45 (28%), Positives = 25/45 (55%)
Frame = -1
Query: 180 LIIEGNSLEDVSSSAALIQQSTTVKNKDIRKFLDGLYVSEKTTVV 46
+++ G ++V SS ++ ++T DI+ L G S KTT++
Sbjct: 48 IVLRGKP-QNVESSGVRVKGNSTSGGNDIKVLLLGAGDSGKTTIM 91
>SPBC2G2.16 |||mannose-6-phosphate isomerase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 412
Score = 23.8 bits (49), Expect = 5.9
Identities = 15/58 (25%), Positives = 28/58 (48%)
Frame = -1
Query: 246 YIRRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTVKNKDIRKFLDGL 73
++ V++ PG V + GN +E +++S +I+ T K KDI ++ L
Sbjct: 245 FLNYVRLHPGEAVFLRALDP-HAYVSGNIIECMAASDNVIRLGFTPKFKDIETLVNNL 301
>SPAC6G10.06 |||amino acid oxidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 376
Score = 23.8 bits (49), Expect = 5.9
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +1
Query: 220 RCHFYPPDVLFTKEVTDL 273
RC F P +++ KE+TDL
Sbjct: 279 RCFFNPFEIIELKEMTDL 296
>SPBC1271.14 |||glutamate N-acetyltransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 445
Score = 23.8 bits (49), Expect = 5.9
Identities = 8/19 (42%), Positives = 14/19 (73%)
Frame = +2
Query: 125 WIRAAELDTSSNEFPSMIS 181
W+RAAE +++ FP ++S
Sbjct: 180 WMRAAEAICTTDTFPKLVS 198
>SPBC30D10.10c |tor1||phosphatidylinositol kinase
Tor1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2335
Score = 23.4 bits (48), Expect = 7.9
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = -3
Query: 178 DHRRKLIRRCIQFSCPDPTINDSKEQGYQK 89
+HR IRRCI F PT+++ + +Q+
Sbjct: 264 EHRDNSIRRCIVFLL--PTLSEYNPKKFQQ 291
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,252,388
Number of Sequences: 5004
Number of extensions: 23024
Number of successful extensions: 70
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 79841814
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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