Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_E07
(309 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0566 - 18583624-18583710,18584445-18584567,18584682-18585044 116 4e-27
02_01_0029 - 176002-176137,176495-176646,177166-177577,178010-17... 116 4e-27
01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132 29 0.98
05_07_0327 - 29275916-29276017,29276101-29276283,29276392-292764... 27 3.0
03_02_0824 + 11556128-11556989,11557515-11559134,11559236-11559825 27 4.0
02_01_0679 - 5048653-5051394 27 4.0
07_03_0978 + 23099690-23100108,23100530-23100564,23100868-231009... 26 5.2
02_01_0081 - 562163-564406 26 5.2
10_08_0943 + 21728294-21728675,21728767-21728840,21729469-217304... 26 6.9
05_03_0173 - 9210279-9210764,9210877-9211605,9213286-9213447 26 6.9
04_03_0278 - 13761999-13762462,13762628-13762727,13763065-137632... 26 6.9
02_05_0278 + 27404914-27404947,27405088-27405228,27405747-274057... 26 6.9
10_01_0056 + 795258-796211 25 9.2
02_05_0939 + 32914936-32915055,32916674-32916823,32917160-329173... 25 9.2
>09_04_0566 - 18583624-18583710,18584445-18584567,18584682-18585044
Length = 190
Score = 116 bits (279), Expect = 4e-27
Identities = 56/90 (62%), Positives = 67/90 (74%)
Frame = -1
Query: 309 INCVTTEGNTIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAAL 130
IN T NT IEIRNFLGEK +R+V M GVT++ S K KDEL+++GN +E VS SAAL
Sbjct: 100 INASITNSNTAIEIRNFLGEKKVRKVDMLEGVTILRSEKVKDELVLDGNDIELVSRSAAL 159
Query: 129 IQQSTTVKNKDIRKFLDGLYVSEKTTVVAD 40
I Q VKNKDIRKFLDG+YVS+K T+ D
Sbjct: 160 INQKCHVKNKDIRKFLDGIYVSDKGTITED 189
>02_01_0029 -
176002-176137,176495-176646,177166-177577,178010-178126,
178260-178322,178964-179167,180605-180687,182394-182516,
182987-183328
Length = 543
Score = 116 bits (279), Expect = 4e-27
Identities = 56/90 (62%), Positives = 67/90 (74%)
Frame = -1
Query: 309 INCVTTEGNTIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAAL 130
IN T NT IEIRNFLGEK +R+V M GVT++ S K KDEL+++GN +E VS SAAL
Sbjct: 93 INASITNSNTAIEIRNFLGEKKVRKVDMLEGVTILRSEKVKDELVLDGNDIELVSRSAAL 152
Query: 129 IQQSTTVKNKDIRKFLDGLYVSEKTTVVAD 40
I Q VKNKDIRKFLDG+YVS+K T+ D
Sbjct: 153 INQKCHVKNKDIRKFLDGIYVSDKGTITED 182
>01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132
Length = 5436
Score = 28.7 bits (61), Expect = 0.98
Identities = 15/52 (28%), Positives = 29/52 (55%)
Frame = -1
Query: 306 NCVTTEGNTIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQKDELIIEGNSLED 151
N ++ + TI + NF+ EK+ K+ G +N+ K++ E + N+L+D
Sbjct: 499 NSISLQVETIEDKTNFMPEKFSELEKVYTGCEKLNNKKEEQEENDKINTLKD 550
>05_07_0327 -
29275916-29276017,29276101-29276283,29276392-29276453,
29276590-29276671,29276922-29276987,29277297-29277359,
29277466-29277570,29277678-29277887,29277988-29278103,
29278875-29279082
Length = 398
Score = 27.1 bits (57), Expect = 3.0
Identities = 9/22 (40%), Positives = 17/22 (77%)
Frame = +2
Query: 116 VDCWIRAAELDTSSNEFPSMIS 181
+D WI+A ELDT+++ + ++S
Sbjct: 299 IDMWIKAKELDTNTDYYLELLS 320
>03_02_0824 + 11556128-11556989,11557515-11559134,11559236-11559825
Length = 1023
Score = 26.6 bits (56), Expect = 4.0
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +2
Query: 134 AAELDTSSNEFPSMISSSFCLGELTTVTPGAIFT 235
A EL T +P +IS L +L PG +FT
Sbjct: 378 AGELPTVIGTYPELISIDLSLNQLHGPLPGNLFT 411
>02_01_0679 - 5048653-5051394
Length = 913
Score = 26.6 bits (56), Expect = 4.0
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +1
Query: 181 FILLFR*IDNCHTRCHFYPPDVLFTKEV 264
F+ L R + NC C +P D +F +E+
Sbjct: 420 FMYLPRHLKNCFLYCSMFPQDYIFKREL 447
>07_03_0978 +
23099690-23100108,23100530-23100564,23100868-23100926,
23101269-23101310,23102003-23102065,23102172-23102253,
23102570-23102609,23102657-23102753
Length = 278
Score = 26.2 bits (55), Expect = 5.2
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +2
Query: 83 KNFLISLFFTVVDCWIRAAELDTS 154
++++I LFF CW + EL TS
Sbjct: 154 RDYIIFLFFLATMCWYQGIELWTS 177
>02_01_0081 - 562163-564406
Length = 747
Score = 26.2 bits (55), Expect = 5.2
Identities = 8/32 (25%), Positives = 20/32 (62%)
Frame = +2
Query: 95 ISLFFTVVDCWIRAAELDTSSNEFPSMISSSF 190
++ + T+++ W+RA +L+++ F M + F
Sbjct: 277 VTTYNTLLNAWVRAGDLESARKVFDEMPGAGF 308
>10_08_0943 +
21728294-21728675,21728767-21728840,21729469-21730443,
21730617-21730683,21730765-21730827,21731001-21731064,
21731162-21731255,21731352-21731435,21731523-21731612,
21731708-21731735,21732117-21732596,21732679-21732740,
21732820-21732929,21733014-21733101,21733228-21733557,
21733782-21733904
Length = 1037
Score = 25.8 bits (54), Expect = 6.9
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +1
Query: 247 LFTKEVTDLNNCVSLSGDTVD 309
L KEVTD++ C+++ TVD
Sbjct: 219 LVPKEVTDMSGCINIFHATVD 239
>05_03_0173 - 9210279-9210764,9210877-9211605,9213286-9213447
Length = 458
Score = 25.8 bits (54), Expect = 6.9
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = +1
Query: 229 FYPPDVLFTKEVTDLNNCVSLSGDTVD 309
F PP+ +F + + + N SG+T+D
Sbjct: 326 FEPPESIFDESIEEFNEREDESGETID 352
>04_03_0278 -
13761999-13762462,13762628-13762727,13763065-13763289,
13763347-13763415,13763605-13764432,13764706-13764779,
13818821-13818905
Length = 614
Score = 25.8 bits (54), Expect = 6.9
Identities = 18/86 (20%), Positives = 41/86 (47%)
Frame = -1
Query: 282 TIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTVKN 103
T+ E+ + + +++++ V+++ V +NS + +EGN++ +I S V
Sbjct: 58 TVRELTSIMSDEWLKEVELSSEVIPINSTPRPIPCHLEGNNV--------VILYSPIVGV 109
Query: 102 KDIRKFLDGLYVSEKTTVVADEI*DH 25
+ + Y+S+KT D+ H
Sbjct: 110 NIVSESFAFAYLSDKTITPTDKFFKH 135
>02_05_0278 +
27404914-27404947,27405088-27405228,27405747-27405772,
27406036-27406071,27406296-27406976
Length = 305
Score = 25.8 bits (54), Expect = 6.9
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = -3
Query: 160 IRRCIQFSCPDPTINDSKEQGYQKVLG 80
+ C++ DPT ++ +GY+ VLG
Sbjct: 191 VEACVEDYFADPTAAAARSEGYKSVLG 217
>10_01_0056 + 795258-796211
Length = 317
Score = 25.4 bits (53), Expect = 9.2
Identities = 10/25 (40%), Positives = 12/25 (48%)
Frame = -3
Query: 139 SCPDPTINDSKEQGYQKVLGRSLCI 65
SCP P + K GY V S C+
Sbjct: 258 SCPAPEVEKKKPAGYACVSANSECV 282
>02_05_0939 + 32914936-32915055,32916674-32916823,32917160-32917305,
32917396-32917552,32917695-32917753,32918180-32918291,
32918901-32919050,32919180-32919316,32919977-32920123,
32920197-32920298,32920674-32920731,32920840-32920941,
32921905-32921942,32922031-32922157,32922228-32922401,
32922542-32922628,32923838-32923947,32924654-32924714,
32925338-32925515,32925628-32925833,32926108-32926227,
32927202-32927423,32927708-32927847,32927976-32928087,
32928254-32928304,32928384-32928473,32928630-32928800,
32928897-32929049,32929860-32930036,32930131-32930268,
32930363-32930433,32930837-32930936,32931156-32931212,
32931301-32931357,32931451-32931531,32931614-32931696,
32931831-32931966
Length = 1459
Score = 25.4 bits (53), Expect = 9.2
Identities = 20/63 (31%), Positives = 32/63 (50%)
Frame = -1
Query: 267 RNFLGEKYIRRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTVKNKDIRK 88
R L + +RR+KMA G + K + +IE S E ++A QS KN+ +++
Sbjct: 834 RQKLARRELRRLKMAAGEEAKSVEILKRDKMIESLSAE--CAAAKSDAQSEHDKNRLLQR 891
Query: 87 FLD 79
LD
Sbjct: 892 QLD 894
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,858,316
Number of Sequences: 37544
Number of extensions: 140548
Number of successful extensions: 348
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 340
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 348
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 375959444
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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