Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_E07
         (309 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006679-6|AAK84469.1|  189|Caenorhabditis elegans Ribosomal pro...   114   1e-26
Z73103-4|CAA97426.1|  585|Caenorhabditis elegans Hypothetical pr...    25   8.1  
Z54342-2|CAA91144.2| 1220|Caenorhabditis elegans Hypothetical pr...    25   8.1  
AF099925-16|AAC69511.1|  482|Caenorhabditis elegans Calcium bind...    25   8.1  
AF099925-15|AAC69510.2|  585|Caenorhabditis elegans Calcium bind...    25   8.1  
AF099925-14|AAX55690.1|  679|Caenorhabditis elegans Calcium bind...    25   8.1  
AC006744-3|AAF60507.1|  126|Caenorhabditis elegans Hypothetical ...    25   8.1  

>AC006679-6|AAK84469.1|  189|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 9 protein.
          Length = 189

 Score =  114 bits (275), Expect = 1e-26
 Identities = 54/88 (61%), Positives = 66/88 (75%)
 Frame = -1

Query: 309 INCVTTEGNTIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAAL 130
           IN    +GN  +EIRNFLGEK +RRV +  GV    S  QKDE+++EGN ++ VS +AA 
Sbjct: 99  INVTLQDGNRTVEIRNFLGEKIVRRVPLPEGVIATISTAQKDEIVVEGNDVQFVSQAAAR 158

Query: 129 IQQSTTVKNKDIRKFLDGLYVSEKTTVV 46
           IQQST VK KDIRKFLDG+YVSEKTT+V
Sbjct: 159 IQQSTAVKEKDIRKFLDGIYVSEKTTIV 186


>Z73103-4|CAA97426.1|  585|Caenorhabditis elegans Hypothetical
           protein C08F8.5 protein.
          Length = 585

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +1

Query: 34  YLICYNSRLLRYIETVQELSDILVLYCR*LL 126
           +LIC N+ L   + +   L+D+L+  C+ LL
Sbjct: 439 FLICNNATLFSNVFSPYNLNDLLISNCQNLL 469


>Z54342-2|CAA91144.2| 1220|Caenorhabditis elegans Hypothetical
           protein C08H9.2 protein.
          Length = 1220

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 5/59 (8%)
 Frame = -1

Query: 255 GEKYIRRVKMAPGV--TVVNSPKQKDELIIEGNS---LEDVSSSAALIQQSTTVKNKDI 94
           G   I ++K   GV  T+ N     DE+++EG      + V+   A++ +    K++DI
Sbjct: 437 GGSLISKIKDQHGVQITIPNEETNSDEIVVEGKKEGVKKAVTEIRAIVTKIENEKSRDI 495


>AF099925-16|AAC69511.1|  482|Caenorhabditis elegans Calcium binding
           protein homologprotein 1, isoform b protein.
          Length = 482

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
 Frame = -1

Query: 183 ELIIEGNSLEDVSSSAALIQQSTTVKNKDIRKFLDGLYVSEKTTVVADEI*D--H*IRN 13
           E  ++GN        A LI+Q   +    I+ F D + V     ++  EI D  H IRN
Sbjct: 409 EFDLDGNDAVTFDEIALLIEQKYGIPRSMIKTFFDRIDVDGSGDLMPAEIVDFRHLIRN 467


>AF099925-15|AAC69510.2|  585|Caenorhabditis elegans Calcium binding
           protein homologprotein 1, isoform a protein.
          Length = 585

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
 Frame = -1

Query: 183 ELIIEGNSLEDVSSSAALIQQSTTVKNKDIRKFLDGLYVSEKTTVVADEI*D--H*IRN 13
           E  ++GN        A LI+Q   +    I+ F D + V     ++  EI D  H IRN
Sbjct: 409 EFDLDGNDAVTFDEIALLIEQKYGIPRSMIKTFFDRIDVDGSGDLMPAEIVDFRHLIRN 467


>AF099925-14|AAX55690.1|  679|Caenorhabditis elegans Calcium binding
           protein homologprotein 1, isoform d protein.
          Length = 679

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
 Frame = -1

Query: 183 ELIIEGNSLEDVSSSAALIQQSTTVKNKDIRKFLDGLYVSEKTTVVADEI*D--H*IRN 13
           E  ++GN        A LI+Q   +    I+ F D + V     ++  EI D  H IRN
Sbjct: 409 EFDLDGNDAVTFDEIALLIEQKYGIPRSMIKTFFDRIDVDGSGDLMPAEIVDFRHLIRN 467


>AC006744-3|AAF60507.1|  126|Caenorhabditis elegans Hypothetical
           protein Y38C9B.3 protein.
          Length = 126

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -1

Query: 270 IRNFLGEKYIRRVKMAPGVTVVNSP 196
           +RN+L EK+ +     P +TV N+P
Sbjct: 20  LRNYLKEKFEKYKVTIPAITVENNP 44


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,965,814
Number of Sequences: 27780
Number of extensions: 131688
Number of successful extensions: 353
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 351
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 353
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 333802358
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)