BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= S06A01NCLL0001_E07 (309 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AC006679-6|AAK84469.1| 189|Caenorhabditis elegans Ribosomal pro... 114 1e-26 Z73103-4|CAA97426.1| 585|Caenorhabditis elegans Hypothetical pr... 25 8.1 Z54342-2|CAA91144.2| 1220|Caenorhabditis elegans Hypothetical pr... 25 8.1 AF099925-16|AAC69511.1| 482|Caenorhabditis elegans Calcium bind... 25 8.1 AF099925-15|AAC69510.2| 585|Caenorhabditis elegans Calcium bind... 25 8.1 AF099925-14|AAX55690.1| 679|Caenorhabditis elegans Calcium bind... 25 8.1 AC006744-3|AAF60507.1| 126|Caenorhabditis elegans Hypothetical ... 25 8.1 >AC006679-6|AAK84469.1| 189|Caenorhabditis elegans Ribosomal protein, large subunitprotein 9 protein. Length = 189 Score = 114 bits (275), Expect = 1e-26 Identities = 54/88 (61%), Positives = 66/88 (75%) Frame = -1 Query: 309 INCVTTEGNTIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAAL 130 IN +GN +EIRNFLGEK +RRV + GV S QKDE+++EGN ++ VS +AA Sbjct: 99 INVTLQDGNRTVEIRNFLGEKIVRRVPLPEGVIATISTAQKDEIVVEGNDVQFVSQAAAR 158 Query: 129 IQQSTTVKNKDIRKFLDGLYVSEKTTVV 46 IQQST VK KDIRKFLDG+YVSEKTT+V Sbjct: 159 IQQSTAVKEKDIRKFLDGIYVSEKTTIV 186 >Z73103-4|CAA97426.1| 585|Caenorhabditis elegans Hypothetical protein C08F8.5 protein. Length = 585 Score = 25.4 bits (53), Expect = 8.1 Identities = 11/31 (35%), Positives = 19/31 (61%) Frame = +1 Query: 34 YLICYNSRLLRYIETVQELSDILVLYCR*LL 126 +LIC N+ L + + L+D+L+ C+ LL Sbjct: 439 FLICNNATLFSNVFSPYNLNDLLISNCQNLL 469 >Z54342-2|CAA91144.2| 1220|Caenorhabditis elegans Hypothetical protein C08H9.2 protein. Length = 1220 Score = 25.4 bits (53), Expect = 8.1 Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 5/59 (8%) Frame = -1 Query: 255 GEKYIRRVKMAPGV--TVVNSPKQKDELIIEGNS---LEDVSSSAALIQQSTTVKNKDI 94 G I ++K GV T+ N DE+++EG + V+ A++ + K++DI Sbjct: 437 GGSLISKIKDQHGVQITIPNEETNSDEIVVEGKKEGVKKAVTEIRAIVTKIENEKSRDI 495 >AF099925-16|AAC69511.1| 482|Caenorhabditis elegans Calcium binding protein homologprotein 1, isoform b protein. Length = 482 Score = 25.4 bits (53), Expect = 8.1 Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 2/59 (3%) Frame = -1 Query: 183 ELIIEGNSLEDVSSSAALIQQSTTVKNKDIRKFLDGLYVSEKTTVVADEI*D--H*IRN 13 E ++GN A LI+Q + I+ F D + V ++ EI D H IRN Sbjct: 409 EFDLDGNDAVTFDEIALLIEQKYGIPRSMIKTFFDRIDVDGSGDLMPAEIVDFRHLIRN 467 >AF099925-15|AAC69510.2| 585|Caenorhabditis elegans Calcium binding protein homologprotein 1, isoform a protein. Length = 585 Score = 25.4 bits (53), Expect = 8.1 Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 2/59 (3%) Frame = -1 Query: 183 ELIIEGNSLEDVSSSAALIQQSTTVKNKDIRKFLDGLYVSEKTTVVADEI*D--H*IRN 13 E ++GN A LI+Q + I+ F D + V ++ EI D H IRN Sbjct: 409 EFDLDGNDAVTFDEIALLIEQKYGIPRSMIKTFFDRIDVDGSGDLMPAEIVDFRHLIRN 467 >AF099925-14|AAX55690.1| 679|Caenorhabditis elegans Calcium binding protein homologprotein 1, isoform d protein. Length = 679 Score = 25.4 bits (53), Expect = 8.1 Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 2/59 (3%) Frame = -1 Query: 183 ELIIEGNSLEDVSSSAALIQQSTTVKNKDIRKFLDGLYVSEKTTVVADEI*D--H*IRN 13 E ++GN A LI+Q + I+ F D + V ++ EI D H IRN Sbjct: 409 EFDLDGNDAVTFDEIALLIEQKYGIPRSMIKTFFDRIDVDGSGDLMPAEIVDFRHLIRN 467 >AC006744-3|AAF60507.1| 126|Caenorhabditis elegans Hypothetical protein Y38C9B.3 protein. Length = 126 Score = 25.4 bits (53), Expect = 8.1 Identities = 10/25 (40%), Positives = 16/25 (64%) Frame = -1 Query: 270 IRNFLGEKYIRRVKMAPGVTVVNSP 196 +RN+L EK+ + P +TV N+P Sbjct: 20 LRNYLKEKFEKYKVTIPAITVENNP 44 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 6,965,814 Number of Sequences: 27780 Number of extensions: 131688 Number of successful extensions: 353 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 351 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 353 length of database: 12,740,198 effective HSP length: 71 effective length of database: 10,767,818 effective search space used: 333802358 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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