Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_E07
         (309 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY352277-2|AAQ67419.1|   88|Apis mellifera EX4.8-5.8 protein.          21   4.5  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    20   5.9  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    20   5.9  

>AY352277-2|AAQ67419.1|   88|Apis mellifera EX4.8-5.8 protein.
          Length = 88

 Score = 20.6 bits (41), Expect = 4.5
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +3

Query: 141 NWIHLLMSFL 170
           NWIH+ +SFL
Sbjct: 67  NWIHVDISFL 76


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 20.2 bits (40), Expect = 5.9
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = +1

Query: 247 LFTKEVTDLNNCVS 288
           +FT+E T+ N C++
Sbjct: 157 VFTREATERNVCIA 170


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 20.2 bits (40), Expect = 5.9
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = +1

Query: 247 LFTKEVTDLNNCVS 288
           +FT+E T+ N C++
Sbjct: 247 VFTREATERNVCIA 260


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,819
Number of Sequences: 438
Number of extensions: 1537
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6471036
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)