Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_E07
         (309 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g33140.1 68414.m04093 60S ribosomal protein L9 (RPL90A/C) sim...   106   3e-24
At1g33120.1 68414.m04090 60S ribosomal protein L9 (RPL90B) simil...   106   3e-24
At4g10450.1 68417.m01717 60S ribosomal protein L9 (RPL90D) ribos...   106   3e-24
At5g44240.1 68418.m05412 haloacid dehalogenase-like hydrolase fa...    27   1.9  
At4g27180.1 68417.m03904 kinesin-like protein B (KATB)                 27   2.6  
At1g69810.1 68414.m08032 WRKY family transcription factor              27   2.6  
At2g27460.1 68415.m03319 sec23/sec24 transport family protein we...    27   3.4  
At1g78580.1 68414.m09158 alpha, alpha-trehalose-phosphate syntha...    27   3.4  
At5g26240.1 68418.m03129 chloride channel protein (CLC-d) identi...    26   4.5  
At1g73110.1 68414.m08453 ribulose bisphosphate carboxylase/oxyge...    26   5.9  
At4g20160.1 68417.m02949 expressed protein ; expression supporte...    25   7.8  
At3g60460.1 68416.m06762 myb family transcription factor contain...    25   7.8  
At3g13380.1 68416.m01683 leucine-rich repeat family protein / pr...    25   7.8  
At2g19500.1 68415.m02279 FAD-binding domain-containing protein /...    25   7.8  

>At1g33140.1 68414.m04093 60S ribosomal protein L9 (RPL90A/C)
           similar to RIBOSOMAL PROTEIN L9 GB:P49209 from
           [Arabidopsis thaliana]
          Length = 194

 Score =  106 bits (255), Expect = 3e-24
 Identities = 50/80 (62%), Positives = 63/80 (78%)
 Frame = -1

Query: 276 IEIRNFLGEKYIRRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTVKNKD 97
           IEIRNFLGEK +R+V+M  GVT+V S K KDE++++GN +E VS S ALI Q   VK KD
Sbjct: 115 IEIRNFLGEKKVRKVEMLDGVTIVRSEKVKDEIVLDGNDIELVSRSCALINQKCHVKKKD 174

Query: 96  IRKFLDGLYVSEKTTVVADE 37
           IRKFLDG+YVSEK+ +V +E
Sbjct: 175 IRKFLDGIYVSEKSKIVEEE 194


>At1g33120.1 68414.m04090 60S ribosomal protein L9 (RPL90B) similar
           to RIBOSOMAL PROTEIN L9 GB:P49209 from [Arabidopsis
           thaliana]
          Length = 194

 Score =  106 bits (255), Expect = 3e-24
 Identities = 50/80 (62%), Positives = 63/80 (78%)
 Frame = -1

Query: 276 IEIRNFLGEKYIRRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTVKNKD 97
           IEIRNFLGEK +R+V+M  GVT+V S K KDE++++GN +E VS S ALI Q   VK KD
Sbjct: 115 IEIRNFLGEKKVRKVEMLDGVTIVRSEKVKDEIVLDGNDIELVSRSCALINQKCHVKKKD 174

Query: 96  IRKFLDGLYVSEKTTVVADE 37
           IRKFLDG+YVSEK+ +V +E
Sbjct: 175 IRKFLDGIYVSEKSKIVEEE 194


>At4g10450.1 68417.m01717 60S ribosomal protein L9 (RPL90D)
           ribosomal protein L9, cytosolic - garden pea,
           PIR2:S19978
          Length = 194

 Score =  106 bits (254), Expect = 3e-24
 Identities = 53/91 (58%), Positives = 63/91 (69%)
 Frame = -1

Query: 309 INCVTTEGNTIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAAL 130
           IN      N  IEIRNFLGEK +R+V+M  GV +V S K KDE+I+EGN +E VS S AL
Sbjct: 104 INASIDGNNKSIEIRNFLGEKKVRKVEMLDGVKIVRSEKVKDEIILEGNDIELVSRSCAL 163

Query: 129 IQQSTTVKNKDIRKFLDGLYVSEKTTVVADE 37
           I Q   VK KDIRKFLDG+YVSEK  +  +E
Sbjct: 164 INQKCHVKKKDIRKFLDGIYVSEKGKIAVEE 194


>At5g44240.1 68418.m05412 haloacid dehalogenase-like hydrolase
           family protein similar to Potential
           phospholipid-transporting ATPase (EC 3.6.3.1) from {Mus
           musculus} SP|P70704, {Bos taurus} SP|Q29449; contains
           InterPro accession IPR005834: Haloacid dehalogenase-like
           hydrolase
          Length = 1107

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
 Frame = -1

Query: 255 GEKYIRRVKMAPGVTVVNSPKQKDELI-IEGNSLEDVSSS---AALIQQSTTVKNKDIRK 88
           G+K    +++A     + SP+ K +L+ I+G + EDVS S     L  + T  + KD+  
Sbjct: 637 GDKQNTAIQIALSCNFI-SPEPKGQLLMIDGKTEEDVSRSLERVLLTMRITASEPKDVAF 695

Query: 87  FLDG 76
            +DG
Sbjct: 696 VIDG 699


>At4g27180.1 68417.m03904 kinesin-like protein B (KATB)
          Length = 745

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 14/49 (28%), Positives = 23/49 (46%)
 Frame = -1

Query: 186 DELIIEGNSLEDVSSSAALIQQSTTVKNKDIRKFLDGLYVSEKTTVVAD 40
           + L  E     D   +   ++   +V+NK+I +  D L  SE+   VAD
Sbjct: 288 ETLQAEATKQNDFKDTINELESKCSVQNKEIEELQDQLVASERKLQVAD 336


>At1g69810.1 68414.m08032 WRKY family transcription factor
          Length = 387

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -3

Query: 166 KLIRRCIQFSCPDPTIND 113
           K  R C++ SC DP+IND
Sbjct: 187 KKTRVCVKASCEDPSIND 204


>At2g27460.1 68415.m03319 sec23/sec24 transport family protein weak
           similarity to SP|P53992 Protein transport protein Sec24C
           (SEC24-related protein C) {Homo sapiens}; contains Pfam
           domains PF04811: Sec23/Sec24 trunk domain, PF04815:
           Sec23/Sec24 helical domain and PF04810: Sec23/Sec24 zinc
           finger
          Length = 745

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = +2

Query: 128 IRAAELDTSSNEFPSMISSSFCLGELTTVTPGAIFTLLMY 247
           +  A +D SS+E    ++ S  L  L  ++PGA+F L+ +
Sbjct: 123 VYVAAIDISSSEEFLELTKSALLAALEALSPGALFGLVTF 162


>At1g78580.1 68414.m09158 alpha, alpha-trehalose-phosphate synthase,
           UDP-forming, putative / trehalose-6-phosphate synthase,
           putative / UDP-glucose-glucosephosphate
           glucosyltransferase, putative similar to
           trehalose-6-phosphate synthase SL-TPS/P [Selaginella
           lepidophylla] GI:4100325; contains Pfam profiles
           PF00982: Glycosyltransferase family 20, PF02358:
           Trehalose-phosphatase
          Length = 942

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -3

Query: 115 DSKEQGYQKVL-GRSLCI*EDDCCSR*DIRPLNKE 14
           DS  Q  ++ L G +  +  DD C R ++RP N++
Sbjct: 58  DSSRQYVEQYLEGAAAAMAHDDACERQEVRPYNRQ 92


>At5g26240.1 68418.m03129 chloride channel protein (CLC-d) identical
           to CLC-d chloride channel protein [Arabidopsis thaliana]
           GI:1742959
          Length = 792

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 18/67 (26%), Positives = 34/67 (50%)
 Frame = -1

Query: 300 VTTEGNTIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQ 121
           V  E  ++ ++ N   +  +R + + P  + V     + +L+IE N      SSA  +QQ
Sbjct: 710 VVPEDMSLTKVYNLFRQLGLRHLFVVPRPSRVIGLITRKDLLIEENG----ESSAVELQQ 765

Query: 120 STTVKNK 100
           ST+V+ +
Sbjct: 766 STSVRGR 772


>At1g73110.1 68414.m08453 ribulose bisphosphate
           carboxylase/oxygenase activase, putative / RuBisCO
           activase, putative similar to ribulose bisphosphate
           carboxylase/oxygenase activase, chloroplast precursor
           (RuBisCO activase, RA) [Oryza sativa] SWISS-PROT:P93431
          Length = 432

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 14/45 (31%), Positives = 19/45 (42%)
 Frame = -3

Query: 220 WCDSCQFT*TKG*TDHRRKLIRRCIQFSCPDPTINDSKEQGYQKV 86
           W D      T G    RRK  +   QF+ P+ T+    E GY  +
Sbjct: 367 WVDEAGGMETLGKVLLRRKKTQEVPQFTAPEQTVEALLESGYSLI 411


>At4g20160.1 68417.m02949 expressed protein ; expression supported
           by MPSS
          Length = 1188

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 17/57 (29%), Positives = 28/57 (49%)
 Frame = -1

Query: 210 VVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTVKNKDIRKFLDGLYVSEKTTVVAD 40
           VV   K++D + +E N  ++V       Q  TT  +  +RK      V ++TTV +D
Sbjct: 557 VVKGKKKEDFVSLESNKSKEVEDGNIKPQGVTTQADSCLRKPAIEEKVLQETTVKSD 613


>At3g60460.1 68416.m06762 myb family transcription factor contains
           PFAM profile: PF00249 myb-like DNA binding domain
          Length = 297

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 7/74 (9%)
 Frame = -1

Query: 291 EGNTIIEIRNFLGEKYIRRVKMAPGVT---VVN--SPKQKDELIIEGNSLEDVSSSAALI 127
           E  T+IE+++  G K+ R     PG T   V N  S +QK    I  NS  D SSS+   
Sbjct: 71  EERTVIELQSEFGNKWARIATYLPGRTDNDVKNFWSSRQKRLARILHNS-SDASSSSFNP 129

Query: 126 QQSTT--VKNKDIR 91
           + S++  +K K+++
Sbjct: 130 KSSSSHRLKGKNVK 143


>At3g13380.1 68416.m01683 leucine-rich repeat family protein /
           protein kinase family protein contains Pfam domains
           PF00560: Leucine Rich Repeat and PF00069: Protein kinase
           domain
          Length = 1164

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +2

Query: 77  PSKNFLISLFFTVVDCWIRAAELDTSSNEFPSMISSSFC 193
           P  N   S+  ++ +C      LD SSNEF   + S FC
Sbjct: 359 PFNNISGSVPISLTNC-SNLRVLDLSSNEFTGEVPSGFC 396


>At2g19500.1 68415.m02279 FAD-binding domain-containing protein /
           cytokinin oxidase family protein similar to cytokinin
           oxidase, Zea mays [SP|Q9T0N8] [gi:3441978]
          Length = 501

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 12/22 (54%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
 Frame = +2

Query: 167 PSMISS-SFCLGELTTVTPGAI 229
           PS+IS+ S   G +TTVTPG +
Sbjct: 39  PSIISAASHDFGNITTVTPGGV 60


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,509,230
Number of Sequences: 28952
Number of extensions: 119511
Number of successful extensions: 346
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 342
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 346
length of database: 12,070,560
effective HSP length: 70
effective length of database: 10,043,920
effective search space used: 321405440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)