Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_E05
(408 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr 2|||M... 266 9e-73
SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein Ubi2|... 152 2e-38
SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein Ubi1|Schiz... 152 2e-38
SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein Ubi3|Schi... 151 3e-38
SPAC589.10c |||ribomal-ubiquitin fusion protein Ubi5|Schizosacch... 151 3e-38
SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like pro... 95 4e-21
SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase Ubp6|Schizosacc... 44 9e-06
SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces pomb... 42 4e-05
SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyc... 42 5e-05
SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomy... 26 2.6
SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p... 25 3.4
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom... 25 4.5
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein... 25 6.0
SPBC146.08c |||translation initiation factor eIF1A-like|Schizosa... 25 6.0
SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|c... 25 6.0
SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5 |Sc... 25 6.0
SPAC31G5.13 |rpn11|pad1, sks1, bfr2, mts5|19S proteasome regulat... 24 7.9
SPAPYUG7.02c |sin1||stress activated MAP kinase interacting prot... 24 7.9
SPBC16G5.12c |top3||DNA topoisomerase III|Schizosaccharomyces po... 24 7.9
>SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 382
Score = 266 bits (652), Expect = 9e-73
Identities = 129/134 (96%), Positives = 133/134 (99%)
Frame = +2
Query: 5 EAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTG 184
++KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTG
Sbjct: 27 KSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTG 86
Query: 185 KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 364
KTITLEVE SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 87 KTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 146
Query: 365 LRLRGGMQIFVKTL 406
LRLRGGMQIFVKTL
Sbjct: 147 LRLRGGMQIFVKTL 160
Score = 266 bits (652), Expect = 9e-73
Identities = 129/134 (96%), Positives = 133/134 (99%)
Frame = +2
Query: 5 EAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTG 184
++KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTG
Sbjct: 103 KSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTG 162
Query: 185 KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 364
KTITLEVE SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 163 KTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 222
Query: 365 LRLRGGMQIFVKTL 406
LRLRGGMQIFVKTL
Sbjct: 223 LRLRGGMQIFVKTL 236
Score = 266 bits (652), Expect = 9e-73
Identities = 129/134 (96%), Positives = 133/134 (99%)
Frame = +2
Query: 5 EAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTG 184
++KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTG
Sbjct: 179 KSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTG 238
Query: 185 KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 364
KTITLEVE SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 239 KTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 298
Query: 365 LRLRGGMQIFVKTL 406
LRLRGGMQIFVKTL
Sbjct: 299 LRLRGGMQIFVKTL 312
Score = 252 bits (616), Expect = 2e-68
Identities = 121/127 (95%), Positives = 126/127 (99%)
Frame = +2
Query: 5 EAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTG 184
++KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTG
Sbjct: 255 KSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTG 314
Query: 185 KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 364
KTITLEVE SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 315 KTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 374
Query: 365 LRLRGGM 385
LRLRGG+
Sbjct: 375 LRLRGGL 381
Score = 167 bits (405), Expect = 8e-43
Identities = 81/84 (96%), Positives = 83/84 (98%)
Frame = +2
Query: 155 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 334
MQIFVKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 335 IQKESTLHLVLRLRGGMQIFVKTL 406
IQKESTLHLVLRLRGGMQIFVKTL
Sbjct: 61 IQKESTLHLVLRLRGGMQIFVKTL 84
>SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein
Ubi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 152 bits (368), Expect = 2e-38
Identities = 73/77 (94%), Positives = 76/77 (98%)
Frame = +2
Query: 155 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 334
MQIFVKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 335 IQKESTLHLVLRLRGGM 385
IQKESTLHLVLRLRGG+
Sbjct: 61 IQKESTLHLVLRLRGGI 77
Score = 104 bits (249), Expect = 6e-24
Identities = 51/62 (82%), Positives = 56/62 (90%), Gaps = 1/62 (1%)
Frame = +2
Query: 5 EAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG-MQIFVKTLT 181
++KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG ++ +K L
Sbjct: 27 KSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGIIEPSLKALA 86
Query: 182 GK 187
K
Sbjct: 87 SK 88
>SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein
Ubi1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 152 bits (368), Expect = 2e-38
Identities = 73/77 (94%), Positives = 76/77 (98%)
Frame = +2
Query: 155 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 334
MQIFVKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 335 IQKESTLHLVLRLRGGM 385
IQKESTLHLVLRLRGG+
Sbjct: 61 IQKESTLHLVLRLRGGI 77
Score = 104 bits (249), Expect = 6e-24
Identities = 51/62 (82%), Positives = 56/62 (90%), Gaps = 1/62 (1%)
Frame = +2
Query: 5 EAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG-MQIFVKTLT 181
++KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG ++ +K L
Sbjct: 27 KSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGIIEPSLKALA 86
Query: 182 GK 187
K
Sbjct: 87 SK 88
>SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein
Ubi3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 151 bits (367), Expect = 3e-38
Identities = 73/76 (96%), Positives = 75/76 (98%)
Frame = +2
Query: 155 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 334
MQIFVKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 335 IQKESTLHLVLRLRGG 382
IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
Score = 103 bits (247), Expect = 1e-23
Identities = 48/50 (96%), Positives = 50/50 (100%)
Frame = +2
Query: 5 EAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 154
++KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 27 KSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
>SPAC589.10c |||ribomal-ubiquitin fusion protein
Ubi5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 151 bits (367), Expect = 3e-38
Identities = 73/76 (96%), Positives = 75/76 (98%)
Frame = +2
Query: 155 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 334
MQIFVKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 335 IQKESTLHLVLRLRGG 382
IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
Score = 103 bits (247), Expect = 1e-23
Identities = 48/50 (96%), Positives = 50/50 (100%)
Frame = +2
Query: 5 EAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 154
++KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 27 KSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
>SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like
protein modifier Ned8|Schizosaccharomyces pombe|chr
2|||Manual
Length = 78
Score = 95.1 bits (226), Expect = 4e-21
Identities = 41/76 (53%), Positives = 57/76 (75%)
Frame = +2
Query: 155 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 334
M I VKTLTGK I L+++P+D + +K ++++KEGIPP QQRLI+AGKQ+ D + Y+
Sbjct: 1 MLIKVKTLTGKEIELDIDPNDKVSRIKERVEEKEGIPPSQQRLIYAGKQMADDKNAESYH 60
Query: 335 IQKESTLHLVLRLRGG 382
++ S LHLVL LRGG
Sbjct: 61 LEGGSVLHLVLALRGG 76
Score = 65.3 bits (152), Expect = 3e-12
Identities = 27/48 (56%), Positives = 37/48 (77%)
Frame = +2
Query: 11 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 154
++++KEGIPP QQRLI+AGKQ+ D + Y+++ S LHLVL LRGG
Sbjct: 29 RVEEKEGIPPSQQRLIYAGKQMADDKNAESYHLEGGSVLHLVLALRGG 76
>SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase
Ubp6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 467
Score = 44.0 bits (99), Expect = 9e-06
Identities = 20/58 (34%), Positives = 34/58 (58%)
Frame = +2
Query: 182 GKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTL 355
GK LE+EP++T +K ++ +PP++Q++I G QL+D L I+ +TL
Sbjct: 10 GKKYDLEIEPNETGSTLKHQLYSLTQVPPERQKVIVKGGQLKDDVLLGSVGIKPNATL 67
>SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 368
Score = 41.9 bits (94), Expect = 4e-05
Identities = 20/65 (30%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Frame = +2
Query: 155 MQIFVKTLTGKTITLEVEPSDT-IENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 331
M + K L + + +DT I +K KIQ ++ ++Q+LI++G+ L D +T+ +Y
Sbjct: 1 MNLTFKNLQQQKFVISDVSADTKISELKEKIQTQQNYEVERQKLIYSGRILADDKTVGEY 60
Query: 332 NIQKE 346
NI+++
Sbjct: 61 NIKEQ 65
Score = 35.5 bits (78), Expect = 0.003
Identities = 13/36 (36%), Positives = 27/36 (75%)
Frame = +2
Query: 11 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKE 118
KIQ ++ ++Q+LI++G+ L D +T+ +YNI+++
Sbjct: 30 KIQTQQNYEVERQKLIYSGRILADDKTVGEYNIKEQ 65
>SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 354
Score = 41.5 bits (93), Expect = 5e-05
Identities = 21/73 (28%), Positives = 38/73 (52%)
Frame = +2
Query: 155 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 334
+ + +K + + V+ ++ +K I I ++QRLI+AG+ L+D +L Y
Sbjct: 4 ISLTIKAANDQKYAVTVDSESSVLALKEAIAPVADIEKERQRLIYAGRVLKDEESLKTYK 63
Query: 335 IQKESTLHLVLRL 373
IQ ++HLV L
Sbjct: 64 IQDGHSIHLVKTL 76
Score = 36.7 bits (81), Expect = 0.001
Identities = 17/38 (44%), Positives = 25/38 (65%)
Frame = +2
Query: 32 IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 145
I ++QRLI+AG+ L+D +L Y IQ ++HLV L
Sbjct: 39 IEKERQRLIYAGRVLKDEESLKTYKIQDGHSIHLVKTL 76
>SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 603
Score = 25.8 bits (54), Expect = 2.6
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Frame = +2
Query: 158 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD--Y 331
+I V T+ K +V + T+ +K I P D+ +LI AG+ L + L + +
Sbjct: 5 RIRVTTVDQKVGIFQVPRTKTVLELKELIAVTFEAPADRLKLIHAGRVLRNETPLEEILH 64
Query: 332 NIQKESTLHLVL 367
+ T HLV+
Sbjct: 65 DATDLVTFHLVI 76
>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 728
Score = 25.4 bits (53), Expect = 3.4
Identities = 14/21 (66%), Positives = 17/21 (80%), Gaps = 1/21 (4%)
Frame = -3
Query: 322 KSTAIFKLLSSKNQ-SLLVRR 263
KST+I LLSSK+Q S L+RR
Sbjct: 28 KSTSIIDLLSSKSQFSKLIRR 48
>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1375
Score = 25.0 bits (52), Expect = 4.5
Identities = 10/23 (43%), Positives = 12/23 (52%)
Frame = -2
Query: 278 SAGQEGCLLCLGSWLLHSRWCLM 210
+ G C CL +WL HS C M
Sbjct: 1106 TCGHLYCSFCLEAWLKHSSSCPM 1128
>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 24.6 bits (51), Expect = 6.0
Identities = 14/53 (26%), Positives = 23/53 (43%)
Frame = -1
Query: 309 SSSCFPAKISLCWSGGMPSLSWILAFTFSMVSDGSTSRVIVLPVRVFTNICIP 151
++S P+ S + G P + S++S S S VLP + T+ P
Sbjct: 204 NTSMIPSSSSFTTTTGSPYYNTSSFLPSSVISSASLSSSSVLPTSIITSTSTP 256
>SPBC146.08c |||translation initiation factor
eIF1A-like|Schizosaccharomyces pombe|chr 2|||Manual
Length = 127
Score = 24.6 bits (51), Expect = 6.0
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 5/50 (10%)
Frame = -3
Query: 355 KSRFLLNVVIRKSTAIFKLLSSKNQSLLVR-----RDAFFVLDLGFYILD 221
K + + VV K +A+F ++ + Q LLV R+ +V GF I+D
Sbjct: 19 KDQVVAKVVQLKGSALFMVVENNGQELLVEMPPKYRNKIWVRRNGFVIVD 68
>SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 577
Score = 24.6 bits (51), Expect = 6.0
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Frame = +2
Query: 164 FVKTLTGKTITLEVEPSDTIE--NVKAKIQDKEG 259
F LT T T+E EP+ TI+ ++A++ +K G
Sbjct: 22 FEDALTFITKTIEQEPNPTIDLFELRAQVYEKSG 55
>SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 632
Score = 24.6 bits (51), Expect = 6.0
Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +2
Query: 80 DGRTLSDYNIQKESTLHLVLRLR-GGMQIFVKTLTGKTITL 199
DG TL++ N HL++RL+ ++ + +T+TL
Sbjct: 432 DGETLNEINTNNPEREHLIVRLKVDSQKLKIIVEQSQTLTL 472
Score = 24.2 bits (50), Expect = 7.9
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +2
Query: 308 DGRTLSDYNIQKESTLHLVLRLR 376
DG TL++ N HL++RL+
Sbjct: 432 DGETLNEINTNNPEREHLIVRLK 454
>SPAC31G5.13 |rpn11|pad1, sks1, bfr2, mts5|19S proteasome regulatory
subunit Rpn11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 308
Score = 24.2 bits (50), Expect = 7.9
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = +2
Query: 224 ENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQK 343
E ++Q++ + P+Q R+ + GKQ D + D +QK
Sbjct: 252 EQYTERVQNEVTLSPEQLRIQYVGKQ--DPKKHLDAEVQK 289
>SPAPYUG7.02c |sin1||stress activated MAP kinase interacting protein
Sin1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 665
Score = 24.2 bits (50), Expect = 7.9
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = -3
Query: 166 KYLHSTSQTKDQVEGRFFLNVIIRKSPAIFKLLSSKNQ 53
K + T +T G L +KSP FK++ SKN+
Sbjct: 595 KNIFETPKTSSIHAGSIILCKQSKKSPCNFKMIVSKNR 632
>SPBC16G5.12c |top3||DNA topoisomerase III|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 622
Score = 24.2 bits (50), Expect = 7.9
Identities = 8/29 (27%), Positives = 15/29 (51%)
Frame = +1
Query: 106 HSERIYPPLGPSSERWNANICEDPHWQDY 192
H++R +PP+ P + + HW+ Y
Sbjct: 377 HNDRAHPPIHPVQMVHRSALPSQDHWKVY 405
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,863,224
Number of Sequences: 5004
Number of extensions: 38684
Number of successful extensions: 132
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 140222766
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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