Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_E05
         (408 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              27   0.11 
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          21   7.1  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    20   9.4  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                20   9.4  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 26.6 bits (56), Expect = 0.11
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = +2

Query: 212 SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 322
           +DT+   K KI  K  I PD + L+   KQ E G TL
Sbjct: 732 TDTVLAYKPKILGKPTISPDSRHLVTLDKQ-ETGVTL 767


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 20.6 bits (41), Expect = 7.1
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = -3

Query: 388 LHSTSETEHQVKSRFLLNVVIRKSTAIFKLLSSKNQSLLVRRDA 257
           L +  ET H   S F +N+ I     I KLL  K   LL+ ++A
Sbjct: 450 LKNKVETTHSGTSLFRINLGIECGYEIKKLLRYK---LLISQNA 490


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 20.2 bits (40), Expect = 9.4
 Identities = 6/10 (60%), Positives = 7/10 (70%)
 Frame = -2

Query: 347 IPSECCNQKE 318
           IP+ CCN  E
Sbjct: 159 IPASCCNSPE 168


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 20.2 bits (40), Expect = 9.4
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = +1

Query: 178 HWQDYHP*GGAIRHHR 225
           H   YHP  G+  HH+
Sbjct: 322 HPSQYHPHRGSSPHHQ 337


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 121,463
Number of Sequences: 438
Number of extensions: 2544
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10256061
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)