Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_E04
         (316 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex det...    24   0.50 
AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex det...    24   0.50 
AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex det...    24   0.50 
AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex det...    24   0.50 
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   1.5  
DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex det...    20   6.2  
DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex det...    20   6.2  
DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex det...    20   6.2  
DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex det...    20   6.2  
DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex det...    20   6.2  
DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex det...    20   6.2  

>AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 23.8 bits (49), Expect = 0.50
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = -2

Query: 282 NTSHNNNNRKQL 247
           NT HNNNN K+L
Sbjct: 310 NTIHNNNNYKKL 321


>AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 23.8 bits (49), Expect = 0.50
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = -2

Query: 282 NTSHNNNNRKQL 247
           NT HNNNN K+L
Sbjct: 321 NTIHNNNNYKKL 332


>AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 23.8 bits (49), Expect = 0.50
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = -2

Query: 282 NTSHNNNNRKQL 247
           NT HNNNN K+L
Sbjct: 321 NTIHNNNNYKKL 332


>AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 23.8 bits (49), Expect = 0.50
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = -2

Query: 282 NTSHNNNNRKQL 247
           NT HNNNN K+L
Sbjct: 310 NTIHNNNNYKKL 321


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 22.2 bits (45), Expect = 1.5
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +2

Query: 5   EGNAMFRSIFILYFLPLNK*LVER 76
           EGN M  + + L F P +K ++++
Sbjct: 873 EGNLMINNKYALKFFPFDKHILDK 896


>DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 20.2 bits (40), Expect = 6.2
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = -2

Query: 279 TSHNNNNRKQL 247
           +++NNNN KQL
Sbjct: 92  SNYNNNNYKQL 102


>DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 20.2 bits (40), Expect = 6.2
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = -2

Query: 279 TSHNNNNRKQL 247
           +++NNNN KQL
Sbjct: 92  SNYNNNNYKQL 102


>DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 20.2 bits (40), Expect = 6.2
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = -2

Query: 279 TSHNNNNRKQL 247
           +++NNNN KQL
Sbjct: 92  SNYNNNNYKQL 102


>DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 20.2 bits (40), Expect = 6.2
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = -2

Query: 279 TSHNNNNRKQL 247
           +++NNNN KQL
Sbjct: 92  SNYNNNNYKQL 102


>DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 20.2 bits (40), Expect = 6.2
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = -2

Query: 279 TSHNNNNRKQL 247
           +++NNNN KQL
Sbjct: 92  SNYNNNNYKQL 102


>DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 20.2 bits (40), Expect = 6.2
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = -2

Query: 279 TSHNNNNRKQL 247
           +++NNNN KQL
Sbjct: 92  SNYNNNNYKQL 102


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 51,975
Number of Sequences: 438
Number of extensions: 691
Number of successful extensions: 19
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6719922
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)