Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_E03
(506 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_A7SGC3 Cluster: Predicted protein; n=5; Eumetazoa|Rep: ... 217 2e-55
UniRef50_Q9U762 Cluster: 40S ribosomal protein S6; n=10; Culicim... 216 3e-55
UniRef50_P62753 Cluster: 40S ribosomal protein S6; n=203; Eukary... 212 3e-54
UniRef50_A5K858 Cluster: 40S ribosomal protein S6, putative; n=5... 169 2e-41
UniRef50_A0CU37 Cluster: Chromosome undetermined scaffold_28, wh... 160 1e-38
UniRef50_A4VD76 Cluster: Putative uncharacterized protein; n=1; ... 157 2e-37
UniRef50_A0DEZ7 Cluster: Chromosome undetermined scaffold_48, wh... 139 3e-32
UniRef50_A2EFM7 Cluster: Ribosomal protein S6e, putative; n=2; T... 136 4e-31
UniRef50_Q9NE83 Cluster: 40S ribosomal protein S6; n=9; Trypanos... 136 4e-31
UniRef50_O15598 Cluster: Ribosomal protein S6; n=6; Entamoeba hi... 126 4e-28
UniRef50_Q7QSH4 Cluster: GLP_64_20707_19961; n=1; Giardia lambli... 124 1e-27
UniRef50_Q98SA3 Cluster: 40S ribosomal protein S6; n=1; Guillard... 90 3e-17
UniRef50_Q8SRY0 Cluster: 40S ribosomal protein S6; n=1; Encephal... 89 7e-17
UniRef50_P29327-2 Cluster: Isoform B of P29327 ; n=3; Drosophila... 86 4e-16
UniRef50_UPI00005A146E Cluster: PREDICTED: similar to 40S riboso... 60 2e-08
UniRef50_Q4V5Z5 Cluster: IP07914p; n=1; Drosophila melanogaster|... 60 3e-08
UniRef50_UPI0000DC1AEC Cluster: UPI0000DC1AEC related cluster; n... 50 3e-05
UniRef50_Q5JDK8 Cluster: 30S ribosomal protein S6e; n=1; Thermoc... 47 3e-04
UniRef50_O29739 Cluster: 30S ribosomal protein S6e; n=7; Euryarc... 47 3e-04
UniRef50_Q8U3H8 Cluster: 30S ribosomal protein S6e; n=4; Archaea... 46 5e-04
UniRef50_Q01CM6 Cluster: Chromosome 03 contig 1, DNA sequence; n... 46 7e-04
UniRef50_A6C4P7 Cluster: Pseudouridine synthase; n=1; Planctomyc... 44 0.002
UniRef50_Q2NGM7 Cluster: 30S ribosomal protein S6e; n=2; Methano... 42 0.008
UniRef50_Q980A6 Cluster: 30S ribosomal protein S6e; n=5; Sulfolo... 40 0.024
UniRef50_A2BJZ7 Cluster: 30S ribosomal protein S6e; n=2; Desulfu... 38 0.13
UniRef50_Q9Y9B6 Cluster: 30S ribosomal protein S6e; n=1; Aeropyr... 38 0.13
UniRef50_UPI00015BAF12 Cluster: SSU ribosomal protein S6E; n=1; ... 37 0.23
UniRef50_Q6LXY7 Cluster: 30S ribosomal protein S6e; n=4; Archaea... 36 0.70
UniRef50_Q2H164 Cluster: Putative uncharacterized protein; n=1; ... 35 0.92
UniRef50_Q9HMJ5 Cluster: 30S ribosomal protein S6e; n=6; Halobac... 35 1.2
UniRef50_Q4RQ03 Cluster: Chromosome 17 SCAF15006, whole genome s... 34 2.1
UniRef50_Q8TRJ6 Cluster: Glycosyltransferase; n=1; Methanosarcin... 34 2.1
UniRef50_Q9LIQ0 Cluster: Genomic DNA, chromosome 3, BAC clone:F1... 33 3.7
UniRef50_Q6ZAY7 Cluster: Putative uncharacterized protein OJ1540... 32 6.5
UniRef50_UPI0000F20637 Cluster: PREDICTED: hypothetical protein,... 32 8.6
UniRef50_Q3A5C8 Cluster: Putative uncharacterized protein; n=1; ... 32 8.6
UniRef50_Q2RRC4 Cluster: DNA helicase, putative; n=1; Rhodospiri... 32 8.6
UniRef50_A1TZN4 Cluster: Flagellar hook-associated protein FlgK;... 32 8.6
UniRef50_A0N0V6 Cluster: Putative regulatory protein; n=2; Azoar... 32 8.6
UniRef50_Q6NZL8 Cluster: Signal peptide, CUB and EGF-like domain... 32 8.6
>UniRef50_A7SGC3 Cluster: Predicted protein; n=5; Eumetazoa|Rep:
Predicted protein - Nematostella vectensis
Length = 245
Score = 217 bits (529), Expect = 2e-55
Identities = 103/135 (76%), Positives = 116/135 (85%)
Frame = +2
Query: 23 GTRDKQCFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVI 202
G DKQ FPMKQG++TN RVRLL+SKGHSCYRPRR GERKRKSVRGCIVD+ LSVL+LVI
Sbjct: 54 GGNDKQGFPMKQGIMTNGRVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDSQLSVLSLVI 113
Query: 203 VRKGAQEIPGLTDGEVPRRLGPKRASKIRKLFNLKKEDDVRRYVVKRLLPAKEGKENAKP 382
V+KG Q+IPGLTD +PRRLGPKR KIRK+FNL KEDDVR+YV++R LP KEGK K
Sbjct: 114 VKKGEQDIPGLTDNTIPRRLGPKRVGKIRKMFNLSKEDDVRQYVIRRPLPEKEGK---KA 170
Query: 383 RYKAPKIQRLVTPVV 427
+ KAPKIQRLVTPVV
Sbjct: 171 KSKAPKIQRLVTPVV 185
>UniRef50_Q9U762 Cluster: 40S ribosomal protein S6; n=10;
Culicimorpha|Rep: 40S ribosomal protein S6 - Aedes
albopictus (Forest day mosquito)
Length = 349
Score = 216 bits (527), Expect = 3e-55
Identities = 105/135 (77%), Positives = 116/135 (85%)
Frame = +2
Query: 23 GTRDKQCFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVI 202
G DKQ FPMKQGVLTN+RVRLL+ KGHSCYRPRR GERKRKSVRGCIVD NLS LAL++
Sbjct: 54 GGNDKQGFPMKQGVLTNTRVRLLLKKGHSCYRPRRTGERKRKSVRGCIVDQNLSALALIV 113
Query: 203 VRKGAQEIPGLTDGEVPRRLGPKRASKIRKLFNLKKEDDVRRYVVKRLLPAKEGKENAKP 382
V+KG ++IPGLTD V RRLGPKRAS IRKL+NL KEDDVR+YVVKR LP K+GK KP
Sbjct: 114 VKKGEKDIPGLTDTTVLRRLGPKRASNIRKLYNLTKEDDVRQYVVKRPLPEKDGK---KP 170
Query: 383 RYKAPKIQRLVTPVV 427
R KAPKIQRL+TPVV
Sbjct: 171 RTKAPKIQRLITPVV 185
>UniRef50_P62753 Cluster: 40S ribosomal protein S6; n=203;
Eukaryota|Rep: 40S ribosomal protein S6 - Homo sapiens
(Human)
Length = 249
Score = 212 bits (518), Expect = 3e-54
Identities = 108/135 (80%), Positives = 117/135 (86%)
Frame = +2
Query: 23 GTRDKQCFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVI 202
G DKQ FPMKQGVLT+ RVRLL+SKGHSCYRPRR GERKRKSVRGCIVDANLSVL LVI
Sbjct: 54 GGNDKQGFPMKQGVLTHGRVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDANLSVLNLVI 113
Query: 203 VRKGAQEIPGLTDGEVPRRLGPKRASKIRKLFNLKKEDDVRRYVVKRLLPAKEGKENAKP 382
V+KG ++IPGLTD VPRRLGPKRAS+IRKLFNL KEDDVR+YVV++ L KEGK KP
Sbjct: 114 VKKGEKDIPGLTDTTVPRRLGPKRASRIRKLFNLSKEDDVRQYVVRKPL-NKEGK---KP 169
Query: 383 RYKAPKIQRLVTPVV 427
R KAPKIQRLVTP V
Sbjct: 170 RTKAPKIQRLVTPRV 184
>UniRef50_A5K858 Cluster: 40S ribosomal protein S6, putative; n=5;
Plasmodium|Rep: 40S ribosomal protein S6, putative -
Plasmodium vivax
Length = 391
Score = 169 bits (412), Expect = 2e-41
Identities = 84/132 (63%), Positives = 99/132 (75%)
Frame = +2
Query: 23 GTRDKQCFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVI 202
G DKQ FPM QGVLTN+RVRLL KG CYRPR+ GE++RKSVRGCIV +LS L L +
Sbjct: 95 GGNDKQGFPMMQGVLTNNRVRLLFKKGMKCYRPRKKGEKRRKSVRGCIVGQDLSALNLTL 154
Query: 203 VRKGAQEIPGLTDGEVPRRLGPKRASKIRKLFNLKKEDDVRRYVVKRLLPAKEGKENAKP 382
V+KG EIPGLTD V ++LGPKRA+KIRKLFNL K DDVR+YV+ R + +N K
Sbjct: 155 VKKGTNEIPGLTDKAVGKKLGPKRATKIRKLFNLDKTDDVRKYVIGRAI-----SKNGKN 209
Query: 383 RYKAPKIQRLVT 418
R+ PKIQRLVT
Sbjct: 210 RFIKPKIQRLVT 221
>UniRef50_A0CU37 Cluster: Chromosome undetermined scaffold_28, whole
genome shotgun sequence; n=6; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_28,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 315
Score = 160 bits (389), Expect = 1e-38
Identities = 81/132 (61%), Positives = 95/132 (71%)
Frame = +2
Query: 23 GTRDKQCFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVI 202
G DKQ FPM+QGVL RVR+LM KGH YRPR+DGE KRKS+RGCIV ++ VLAL +
Sbjct: 54 GGNDKQGFPMRQGVLFKGRVRILMRKGHKGYRPRKDGEMKRKSIRGCIVGQDIRVLALQV 113
Query: 203 VRKGAQEIPGLTDGEVPRRLGPKRASKIRKLFNLKKEDDVRRYVVKRLLPAKEGKENAKP 382
V+KGA EI GLTD VPRRLGPKR +K+R+LF KK D V V K L+ ++ K
Sbjct: 114 VKKGANEIAGLTDQNVPRRLGPKRLTKLRRLFGFKKADGV-AIVQKNLIRRTWTTKDGKK 172
Query: 383 RYKAPKIQRLVT 418
R KAPKIQRLVT
Sbjct: 173 RQKAPKIQRLVT 184
>UniRef50_A4VD76 Cluster: Putative uncharacterized protein; n=1;
Tetrahymena thermophila SB210|Rep: Putative
uncharacterized protein - Tetrahymena thermophila SB210
Length = 293
Score = 157 bits (380), Expect = 2e-37
Identities = 79/136 (58%), Positives = 98/136 (72%), Gaps = 3/136 (2%)
Frame = +2
Query: 23 GTRDKQCFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVI 202
G DK FPMKQGV+ RVRLL+S+GHSC+ RR G RKRKSVRGCIV ++ VLAL I
Sbjct: 54 GGNDKDGFPMKQGVMVRGRVRLLLSEGHSCFTSRRSGFRKRKSVRGCIVGPDMRVLALQI 113
Query: 203 VRKGAQEIPGLTDGEVPRRLGPKRASKIRKLFNLKKEDD---VRRYVVKRLLPAKEGKEN 373
V+KG EI GLT +PR+LGPKRA+ I+KLF LKKEDD +++ V++R +GK+
Sbjct: 114 VKKGVAEIDGLTTVTLPRKLGPKRANNIKKLFGLKKEDDPILIKKSVIRRTFKTAKGKD- 172
Query: 374 AKPRYKAPKIQRLVTP 421
R K PKIQRL+TP
Sbjct: 173 ---RTKCPKIQRLITP 185
>UniRef50_A0DEZ7 Cluster: Chromosome undetermined scaffold_48, whole
genome shotgun sequence; n=1; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_48,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 304
Score = 139 bits (337), Expect = 3e-32
Identities = 74/122 (60%), Positives = 87/122 (71%)
Frame = +2
Query: 53 KQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPG 232
KQGVL RVR+LM KGH YRPR+DGE KRKS+RGCIV ++ VLAL +V+KGA EI G
Sbjct: 69 KQGVLFKGRVRILMRKGHKGYRPRKDGEMKRKSIRGCIVGQDIRVLALQVVKKGANEIAG 128
Query: 233 LTDGEVPRRLGPKRASKIRKLFNLKKEDDVRRYVVKRLLPAKEGKENAKPRYKAPKIQRL 412
LTD VPRRLGPKR +K+R+LF KK D R + P + GK+ R KAPKIQRL
Sbjct: 129 LTDQNVPRRLGPKRLTKLRRLFGFKKAD--RVISSEEHGPQRYGKK----RQKAPKIQRL 182
Query: 413 VT 418
VT
Sbjct: 183 VT 184
>UniRef50_A2EFM7 Cluster: Ribosomal protein S6e, putative; n=2;
Trichomonas vaginalis G3|Rep: Ribosomal protein S6e,
putative - Trichomonas vaginalis G3
Length = 216
Score = 136 bits (328), Expect = 4e-31
Identities = 70/133 (52%), Positives = 91/133 (68%), Gaps = 1/133 (0%)
Frame = +2
Query: 23 GTRDKQCFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVI 202
G DKQ FPMKQGV+T R+RLL+ G SCYRPR+DGERKRK+VRGCI+ +S L V+
Sbjct: 54 GGFDKQGFPMKQGVITPRRIRLLLKTGASCYRPRKDGERKRKTVRGCIISDEISALHCVV 113
Query: 203 VRKGAQEIPGLTDGEVPRRLGPKRASKIRKLFNL-KKEDDVRRYVVKRLLPAKEGKENAK 379
++KG +EI GLT VPRR GPKRAS +R +F + + D + V+KR K GK
Sbjct: 114 LQKGEKEIDGLTTTAVPRRFGPKRASTLRAMFGITDSKFDASKLVLKR--EVKPGK---- 167
Query: 380 PRYKAPKIQRLVT 418
+ +PK+QRL+T
Sbjct: 168 --FTSPKVQRLIT 178
>UniRef50_Q9NE83 Cluster: 40S ribosomal protein S6; n=9;
Trypanosomatidae|Rep: 40S ribosomal protein S6 -
Leishmania major
Length = 249
Score = 136 bits (328), Expect = 4e-31
Identities = 73/137 (53%), Positives = 96/137 (70%), Gaps = 2/137 (1%)
Frame = +2
Query: 23 GTRDKQCFPMKQGVLTNSRVRLLMSKGHSCYRPRR--DGERKRKSVRGCIVDANLSVLAL 196
G DK FPM GVL +SRV LL+ +G + R GER+RK+VRGC++ ++++++ +
Sbjct: 55 GGSDKDGFPMVPGVLASSRVSLLVKRGAIGFNTFRGYQGERRRKNVRGCVLASDIALVNV 114
Query: 197 VIVRKGAQEIPGLTDGEVPRRLGPKRASKIRKLFNLKKEDDVRRYVVKRLLPAKEGKENA 376
I + G Q I G+TD PRRLGPKRASKIRKLFNL + +DVR+YVV+R + K GK
Sbjct: 115 TISKVGDQPIEGVTDTTAPRRLGPKRASKIRKLFNLSRTEDVRKYVVRRRV-VKSGK--- 170
Query: 377 KPRYKAPKIQRLVTPVV 427
K R KAPKIQRL+TP V
Sbjct: 171 KDRLKAPKIQRLITPRV 187
>UniRef50_O15598 Cluster: Ribosomal protein S6; n=6; Entamoeba
histolytica|Rep: Ribosomal protein S6 - Entamoeba
histolytica
Length = 162
Score = 126 bits (303), Expect = 4e-28
Identities = 57/107 (53%), Positives = 80/107 (74%)
Frame = +2
Query: 23 GTRDKQCFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVI 202
G DK FPM GV TN+RVRLL+ + CY+P R+GER+RK+VRG IV ++SVL ++
Sbjct: 53 GGCDKDGFPMMTGVATNNRVRLLLDGRNGCYKPLRNGERRRKTVRGAIVAGDISVLNTIV 112
Query: 203 VRKGAQEIPGLTDGEVPRRLGPKRASKIRKLFNLKKEDDVRRYVVKR 343
V+KG EI G+T+ +P R GP+RAS RKLFNL ++DDV+++V++R
Sbjct: 113 VKKGEGEIEGVTNDALPMRAGPQRASHFRKLFNLSQKDDVKKFVIRR 159
>UniRef50_Q7QSH4 Cluster: GLP_64_20707_19961; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_64_20707_19961 - Giardia lamblia
ATCC 50803
Length = 248
Score = 124 bits (299), Expect = 1e-27
Identities = 69/137 (50%), Positives = 90/137 (65%), Gaps = 5/137 (3%)
Frame = +2
Query: 23 GTRDKQCFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVI 202
G D Q FPM QGVL + R RLL+ +G CY RR+GERKRKS+RGCIV +L L++V+
Sbjct: 60 GGNDAQGFPMYQGVLKSQRARLLLRQGAKCYLHRRNGERKRKSIRGCIVGPDLHALSVVL 119
Query: 203 VRKGAQEIPGLTDGEVPRRLGPKRASKIRKLFNL--KKEDDVRRYVVKRL---LPAKEGK 367
V G + +PGLTD VP+RL PKRASKIR+LF L K D + +V L L +
Sbjct: 120 VDAGDKTLPGLTDVVVPKRLVPKRASKIRRLFGLPTTKVDPKDQMLVCELIKELGHEVTL 179
Query: 368 ENAKPRYKAPKIQRLVT 418
+N + + K PK+QR+VT
Sbjct: 180 KNGEKKLKYPKVQRVVT 196
>UniRef50_Q98SA3 Cluster: 40S ribosomal protein S6; n=1; Guillardia
theta|Rep: 40S ribosomal protein S6 - Guillardia theta
(Cryptomonas phi)
Length = 209
Score = 89.8 bits (213), Expect = 3e-17
Identities = 55/136 (40%), Positives = 83/136 (61%), Gaps = 2/136 (1%)
Frame = +2
Query: 23 GTRDKQCFPMKQGVLTNSRVRLLMSKGHSCYR--PRRDGERKRKSVRGCIVDANLSVLAL 196
G +DKQ FPMK+G+L+ SRV++L+ KG + R + GER RKSVRGCIV +SVL +
Sbjct: 54 GGQDKQGFPMKEGILSPSRVKILLKKGSTGCRGYKMKKGERCRKSVRGCIVSPEISVLNI 113
Query: 197 VIVRKGAQEIPGLTDGEVPRRLGPKRASKIRKLFNLKKEDDVRRYVVKRLLPAKEGKENA 376
++ ++ +T+ + L KR+S +RK+ L K DD+R++ +K AK+ K
Sbjct: 114 KLLTNKNDDLL-ITNKNSEKTLTHKRSSNLRKVLCLTKTDDIRKHYIK---IAKDFKNKV 169
Query: 377 KPRYKAPKIQRLVTPV 424
KIQRL+TP+
Sbjct: 170 -------KIQRLITPI 178
>UniRef50_Q8SRY0 Cluster: 40S ribosomal protein S6; n=1;
Encephalitozoon cuniculi|Rep: 40S ribosomal protein S6 -
Encephalitozoon cuniculi
Length = 203
Score = 88.6 bits (210), Expect = 7e-17
Identities = 52/131 (39%), Positives = 77/131 (58%), Gaps = 2/131 (1%)
Frame = +2
Query: 23 GTRDKQCFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVI 202
G D Q FPM G LT RVR L+SKG + YR RR G R+RKSVRG IV + VL L+I
Sbjct: 39 GGDDYQGFPMVSGHLTKKRVRPLLSKGDAGYRCRRKGVRRRKSVRGSIVSEEICVLNLII 98
Query: 203 VRKGAQEIPGLTDGEVPRRLGPKRASKIRKLFNLKKEDDVRRYVVKRLLPAK--EGKENA 376
+R G +EI GLT+ P++ K+RK+F + E+ ++ +L ++ + K+
Sbjct: 99 LRPGEKEIDGLTNAVNDVSHLPRKEKKLRKMFGVPDEEKNVVGYIRNILKSECDDPKKIP 158
Query: 377 KPRYKAPKIQR 409
K R+ +++R
Sbjct: 159 KIRHNGKRMKR 169
>UniRef50_P29327-2 Cluster: Isoform B of P29327 ; n=3; Drosophila
melanogaster|Rep: Isoform B of P29327 - Drosophila
melanogaster (Fruit fly)
Length = 200
Score = 86.2 bits (204), Expect = 4e-16
Identities = 55/126 (43%), Positives = 73/126 (57%)
Frame = +2
Query: 23 GTRDKQCFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVI 202
G DKQ FPMKQGVLT+ R+RLL K HSC+ PR + RK K+VR V+AN+S L LV+
Sbjct: 54 GGNDKQGFPMKQGVLTHGRLRLL-KKIHSCFHPRCNKVRKCKTVRKYTVEANVSALTLVV 112
Query: 203 VRKGAQEIPGLTDGEVPRRLGPKRASKIRKLFNLKKEDDVRRYVVKRLLPAKEGKENAKP 382
++K P RLGP R+S I K++ L +EDD ++P K + + K
Sbjct: 113 LKKNPS----------PCRLGPVRSSNISKIYYLCEEDD-------EVIPVKLQRRHQKK 155
Query: 383 RYKAPK 400
R A K
Sbjct: 156 RQNATK 161
>UniRef50_UPI00005A146E Cluster: PREDICTED: similar to 40S ribosomal
protein S6; n=1; Canis lupus familiaris|Rep: PREDICTED:
similar to 40S ribosomal protein S6 - Canis familiaris
Length = 154
Score = 60.5 bits (140), Expect = 2e-08
Identities = 31/60 (51%), Positives = 41/60 (68%), Gaps = 9/60 (15%)
Frame = +2
Query: 218 QEIPGLTDGEVPRRLGPKRASKIRKLFNLKKEDD---------VRRYVVKRLLPAKEGKE 370
++IPGLTD PR +GPKRAS+IRKLFNL KEDD +R+ + KR+ AKE ++
Sbjct: 80 KDIPGLTDTTEPRHVGPKRASRIRKLFNLSKEDDAAQNSILRKIRKRIYKRMKEAKEKRQ 139
Score = 34.7 bits (76), Expect = 1.2
Identities = 15/24 (62%), Positives = 18/24 (75%)
Frame = +2
Query: 23 GTRDKQCFPMKQGVLTNSRVRLLM 94
G DKQ FPMKQ VLT+ R+ LL+
Sbjct: 54 GGNDKQGFPMKQDVLTHDRIHLLL 77
>UniRef50_Q4V5Z5 Cluster: IP07914p; n=1; Drosophila
melanogaster|Rep: IP07914p - Drosophila melanogaster
(Fruit fly)
Length = 147
Score = 60.1 bits (139), Expect = 3e-08
Identities = 42/108 (38%), Positives = 59/108 (54%)
Frame = +2
Query: 77 RVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGEVPR 256
R+RLL K HSC+ PR + RK K+VR V+AN+S L LV+++K P
Sbjct: 19 RLRLL-KKIHSCFHPRCNKVRKCKTVRKYTVEANVSALTLVVLKKNPS----------PC 67
Query: 257 RLGPKRASKIRKLFNLKKEDDVRRYVVKRLLPAKEGKENAKPRYKAPK 400
RLGP R+S I K++ L +EDD ++P K + + K R A K
Sbjct: 68 RLGPVRSSNISKIYYLCEEDD-------EVIPVKLQRRHQKKRQNATK 108
>UniRef50_UPI0000DC1AEC Cluster: UPI0000DC1AEC related cluster; n=2;
Rattus norvegicus|Rep: UPI0000DC1AEC UniRef100 entry -
Rattus norvegicus
Length = 227
Score = 50.0 bits (114), Expect = 3e-05
Identities = 43/124 (34%), Positives = 66/124 (53%), Gaps = 3/124 (2%)
Frame = +2
Query: 44 FPMKQGVLTNSRVRLLMSKGHS-CYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQ 220
F MKQ VL + RV LL++ HS Y+P R E S++ V +S+L +VI+ G +
Sbjct: 50 FSMKQEVLIHFRVHLLLNNLHSYIYKPLRTREMNYTSLQDA-VKLPISLLNMVIIINGRK 108
Query: 221 EIPGLTDGEVPRRLGPKRASKIRKLFNLKKEDDVRRYVVKRLLPAK--EGKENAKPRYKA 394
+IPG T +R PKR +I+ F++ +K +L K + K++ KPR K
Sbjct: 109 DIPGQT-----KRWAPKRWRRIQS-FSVS---------LKTVLSTKKPQNKDSKKPRPKT 153
Query: 395 PKIQ 406
K+Q
Sbjct: 154 HKVQ 157
>UniRef50_Q5JDK8 Cluster: 30S ribosomal protein S6e; n=1;
Thermococcus kodakarensis KOD1|Rep: 30S ribosomal
protein S6e - Pyrococcus kodakaraensis (Thermococcus
kodakaraensis)
Length = 125
Score = 46.8 bits (106), Expect = 3e-04
Identities = 24/61 (39%), Positives = 37/61 (60%)
Frame = +2
Query: 23 GTRDKQCFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVI 202
G DK FPM+ V RV++L+S+G +RPR GER++K+V G + N+ + + I
Sbjct: 65 GGTDKDGFPMRPDVHGPRRVKILLSRGPG-FRPRERGERRKKTVHGNTISPNIVQVNMKI 123
Query: 203 V 205
V
Sbjct: 124 V 124
>UniRef50_O29739 Cluster: 30S ribosomal protein S6e; n=7;
Euryarchaeota|Rep: 30S ribosomal protein S6e -
Archaeoglobus fulgidus
Length = 129
Score = 46.8 bits (106), Expect = 3e-04
Identities = 24/64 (37%), Positives = 38/64 (59%)
Frame = +2
Query: 23 GTRDKQCFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVI 202
G D+ FPM+ + +R RLL+S G +RP+ G RKRK VRG ++ ++ + V+
Sbjct: 54 GGTDRDGFPMRPDLPGTARRRLLLSGGVG-FRPKEKGLRKRKGVRGRVISKDILQINTVV 112
Query: 203 VRKG 214
V+ G
Sbjct: 113 VKHG 116
>UniRef50_Q8U3H8 Cluster: 30S ribosomal protein S6e; n=4;
Archaea|Rep: 30S ribosomal protein S6e - Pyrococcus
furiosus
Length = 125
Score = 46.0 bits (104), Expect = 5e-04
Identities = 22/46 (47%), Positives = 31/46 (67%)
Frame = +2
Query: 23 GTRDKQCFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRG 160
G DK FPM+ + RVR+L+SKG +RP+ GER++K+VRG
Sbjct: 65 GGTDKDGFPMRPDIHGPRRVRVLLSKGPG-FRPKEKGERRKKTVRG 109
>UniRef50_Q01CM6 Cluster: Chromosome 03 contig 1, DNA sequence; n=1;
Ostreococcus tauri|Rep: Chromosome 03 contig 1, DNA
sequence - Ostreococcus tauri
Length = 211
Score = 45.6 bits (103), Expect = 7e-04
Identities = 31/84 (36%), Positives = 44/84 (52%), Gaps = 2/84 (2%)
Frame = -2
Query: 277 RTLGT*TAGNFTVSQSRNFLCTFADNDQG*D*KVSINNATTNRLAFPLTVTTWSVARVA- 101
RTL T +F + ++R+ DNDQ V ++ATT RLA T+ + A A
Sbjct: 114 RTLRTTETRHFGIGEARDVGVALLDNDQVQHGNVLGDDATTARLASAFTLASAVAAEAAR 173
Query: 100 -F*HQETYTAVSQDSLFHREALLV 32
H++ +T V Q +L H EALLV
Sbjct: 174 ALGHEQEHTLVRQHALLHAEALLV 197
>UniRef50_A6C4P7 Cluster: Pseudouridine synthase; n=1; Planctomyces
maris DSM 8797|Rep: Pseudouridine synthase -
Planctomyces maris DSM 8797
Length = 352
Score = 44.4 bits (100), Expect = 0.002
Identities = 34/117 (29%), Positives = 55/117 (47%), Gaps = 1/117 (0%)
Frame = +2
Query: 53 KQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPG 232
K+GV S ++ L +G S + E + + +R + V+ LV +R G +
Sbjct: 177 KEGVFRVSGLKYLKKQGKSAFLELTLHEGQNREIRRMMARIGHKVIQLVRIRFGPLNLGK 236
Query: 233 LTDGEVPRRLGPKRASKIRKLFNLKKEDDVRRYVVKRLLPAKEGKENAKP-RYKAPK 400
L GE RRL K+R+L N K D+R ++GK+NA P + +AP+
Sbjct: 237 LKTGE-SRRLSDTELKKLRQLLNEKHSPDIRH---------RKGKKNAAPAKTRAPR 283
>UniRef50_Q2NGM7 Cluster: 30S ribosomal protein S6e; n=2;
Methanobacteriaceae|Rep: 30S ribosomal protein S6e -
Methanosphaera stadtmanae (strain DSM 3091)
Length = 130
Score = 41.9 bits (94), Expect = 0.008
Identities = 22/68 (32%), Positives = 39/68 (57%)
Frame = +2
Query: 23 GTRDKQCFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVI 202
G DK FPMK+ V R + L++ G ++P + G R+RK+VRG + ++S + + +
Sbjct: 51 GGSDKNGFPMKEDVDGTRRFKSLVNGGTG-FKPTKKGLRRRKTVRGNTIADDISQINVKV 109
Query: 203 VRKGAQEI 226
+G Q +
Sbjct: 110 SERGEQTL 117
>UniRef50_Q980A6 Cluster: 30S ribosomal protein S6e; n=5;
Sulfolobaceae|Rep: 30S ribosomal protein S6e -
Sulfolobus solfataricus
Length = 214
Score = 40.3 bits (90), Expect = 0.024
Identities = 20/62 (32%), Positives = 36/62 (58%)
Frame = +2
Query: 23 GTRDKQCFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVI 202
G D FPM+ V+ ++ ++L+S G + P +GER+RK++RG + + + +I
Sbjct: 154 GGSDNSGFPMRFDVIGAAKRKILLS-GPPGFYPNENGERRRKTIRGNTISQEIVQINTII 212
Query: 203 VR 208
VR
Sbjct: 213 VR 214
>UniRef50_A2BJZ7 Cluster: 30S ribosomal protein S6e; n=2;
Desulfurococcales|Rep: 30S ribosomal protein S6e -
Hyperthermus butylicus (strain DSM 5456 / JCM 9403)
Length = 217
Score = 37.9 bits (84), Expect = 0.13
Identities = 22/61 (36%), Positives = 33/61 (54%)
Frame = +2
Query: 23 GTRDKQCFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVI 202
G D FPM + + R+L+S G + PR GER+RK+VRG + ++ + VI
Sbjct: 153 GGSDNSGFPMLPSIPGPVKKRVLLS-GPPGFHPREKGERRRKTVRGNTITHDIVQINTVI 211
Query: 203 V 205
V
Sbjct: 212 V 212
>UniRef50_Q9Y9B6 Cluster: 30S ribosomal protein S6e; n=1; Aeropyrum
pernix|Rep: 30S ribosomal protein S6e - Aeropyrum pernix
Length = 235
Score = 37.9 bits (84), Expect = 0.13
Identities = 20/49 (40%), Positives = 29/49 (59%)
Frame = +2
Query: 23 GTRDKQCFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIV 169
G D PM GV + R ++L++ G + PR GER+RKSVRG ++
Sbjct: 162 GGTDATGIPMHPGVPGSGRYKVLLA-GPPGFHPRERGERRRKSVRGRMI 209
>UniRef50_UPI00015BAF12 Cluster: SSU ribosomal protein S6E; n=1;
Ignicoccus hospitalis KIN4/I|Rep: SSU ribosomal protein
S6E - Ignicoccus hospitalis KIN4/I
Length = 236
Score = 37.1 bits (82), Expect = 0.23
Identities = 21/63 (33%), Positives = 35/63 (55%)
Frame = +2
Query: 23 GTRDKQCFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVI 202
G D+ FPM+ + + R L+S G + PR GER+RK+VRG + ++ + I
Sbjct: 175 GGSDESGFPMRPDIPGPVKKRALLS-GPPGFWPREKGERRRKTVRGNTISEDIVQINTKI 233
Query: 203 VRK 211
V++
Sbjct: 234 VKQ 236
>UniRef50_Q6LXY7 Cluster: 30S ribosomal protein S6e; n=4;
Archaea|Rep: 30S ribosomal protein S6e - Methanococcus
maripaludis
Length = 124
Score = 35.5 bits (78), Expect = 0.70
Identities = 18/70 (25%), Positives = 38/70 (54%)
Frame = +2
Query: 23 GTRDKQCFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVI 202
G D+ F M+ + ++R+L+ +G Y + G R+RKS+RG + +++++ +
Sbjct: 50 GGSDRCGFAMRHDIHGAMKMRVLLKEGPG-YNVKEKGLRRRKSLRGNTISKDITLINTKV 108
Query: 203 VRKGAQEIPG 232
V G+ + G
Sbjct: 109 VEYGSAPLGG 118
>UniRef50_Q2H164 Cluster: Putative uncharacterized protein; n=1;
Chaetomium globosum|Rep: Putative uncharacterized
protein - Chaetomium globosum (Soil fungus)
Length = 744
Score = 35.1 bits (77), Expect = 0.92
Identities = 23/64 (35%), Positives = 34/64 (53%)
Frame = -3
Query: 291 LRILDARLGPRRRGTSPSVSPGISCAPLRTMTRAKTERLASTMQPRTDLRFLSPSRRGL* 112
LR +A GP RRG +P +SP S P R+ R R+ ++ QP + +PS+ G
Sbjct: 361 LRSNNAPDGPARRGQTPPISPPPSETPTRSAPREAMGRILTSSQPPAATQ--TPSQTG-- 416
Query: 111 QEWP 100
Q +P
Sbjct: 417 QRYP 420
>UniRef50_Q9HMJ5 Cluster: 30S ribosomal protein S6e; n=6;
Halobacteriaceae|Rep: 30S ribosomal protein S6e -
Halobacterium salinarium (Halobacterium halobium)
Length = 131
Score = 34.7 bits (76), Expect = 1.2
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Frame = +2
Query: 23 GTRDKQCFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVI 202
G D PM++ V + + +L+ +G + + P DGERKR +VRG V ++ L + I
Sbjct: 54 GGSDDAGRPMREDVDGSDLMEVLL-EGGAGFNPDEDGERKRVTVRGKEVSEAVAQLNVAI 112
Query: 203 VRKGAQEIPGL--TDGE 247
G + + L DG+
Sbjct: 113 DEHGEEPVAELLGADGD 129
>UniRef50_Q4RQ03 Cluster: Chromosome 17 SCAF15006, whole genome
shotgun sequence; n=1; Tetraodon nigroviridis|Rep:
Chromosome 17 SCAF15006, whole genome shotgun sequence -
Tetraodon nigroviridis (Green puffer)
Length = 1364
Score = 33.9 bits (74), Expect = 2.1
Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Frame = -1
Query: 212 LCGQ*PGLRLKG*HQQCNHEQTCVSS--HRHDVVCSK--SGLLTSRDVHGC*SGLPVS*G 45
LCG P L G HQ C + TC+++ ++ C++ SG R H C SG P S G
Sbjct: 363 LCGTLPDLNYCGTHQPCLNGGTCINTGPDKYQCTCAEGYSGANCERAEHACLSG-PCSNG 421
Query: 44 ST 39
+
Sbjct: 422 GS 423
>UniRef50_Q8TRJ6 Cluster: Glycosyltransferase; n=1; Methanosarcina
acetivorans|Rep: Glycosyltransferase - Methanosarcina
acetivorans
Length = 812
Score = 33.9 bits (74), Expect = 2.1
Identities = 13/61 (21%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Frame = +2
Query: 47 PMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIV-DANLSVLALVIVRKGAQE 223
P K+ ++T++R ++L+ +SCY PR G+ + ++ + + ++++ +++ K Q
Sbjct: 405 PAKKNIITSNREKILVLATYSCYPPRGGGQHRLYNIYSLLAKEFDVTICSIIEANKQYQN 464
Query: 224 I 226
+
Sbjct: 465 L 465
>UniRef50_Q9LIQ0 Cluster: Genomic DNA, chromosome 3, BAC
clone:F14O13; n=2; Arabidopsis thaliana|Rep: Genomic
DNA, chromosome 3, BAC clone:F14O13 - Arabidopsis
thaliana (Mouse-ear cress)
Length = 637
Score = 33.1 bits (72), Expect = 3.7
Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Frame = +2
Query: 233 LTDGEVPRRLGPKRASKIRKLFNLKKEDDVRRYVVKRL--LPAKEGKENAK 379
+ +G V ++ ++A + K +KKEDDVR+ +KRL + KE KE K
Sbjct: 287 VVEGSVRKKDNARKAQRKNKDERMKKEDDVRKEELKRLKNVKKKEIKEKMK 337
>UniRef50_Q6ZAY7 Cluster: Putative uncharacterized protein
OJ1540_G08.6; n=1; Oryza sativa (japonica
cultivar-group)|Rep: Putative uncharacterized protein
OJ1540_G08.6 - Oryza sativa subsp. japonica (Rice)
Length = 240
Score = 32.3 bits (70), Expect = 6.5
Identities = 17/51 (33%), Positives = 25/51 (49%)
Frame = -3
Query: 273 RLGPRRRGTSPSVSPGISCAPLRTMTRAKTERLASTMQPRTDLRFLSPSRR 121
R GPRRR T+P+ C P +++ R + A+ P SP+RR
Sbjct: 166 RHGPRRRSTAPARRLRPPCRPTQSLARLRCGAAAAATIPTRGAAPASPARR 216
>UniRef50_UPI0000F20637 Cluster: PREDICTED: hypothetical protein,
partial; n=1; Danio rerio|Rep: PREDICTED: hypothetical
protein, partial - Danio rerio
Length = 867
Score = 31.9 bits (69), Expect = 8.6
Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 3/88 (3%)
Frame = +2
Query: 167 VDANLSVLALVIVRKGAQEIPGLTDGEVPRRLGP---KRASKIRKLFNLKKEDDVRRYVV 337
+D N SV V+ K + P + ++ P K+ ++ K+ KKE ++ + V
Sbjct: 488 IDVNKSVEPEVVKEKAPESKPQKEAEIIKEKVKPAPVKKEPEVAKVPKPKKEAELAKEKV 547
Query: 338 KRLLPAKEGKENAKPRYKAPKIQRLVTP 421
K KE K A P+ +A I+ TP
Sbjct: 548 KPAPVKKEEKPKAAPKKEAEAIKEKRTP 575
>UniRef50_Q3A5C8 Cluster: Putative uncharacterized protein; n=1;
Pelobacter carbinolicus DSM 2380|Rep: Putative
uncharacterized protein - Pelobacter carbinolicus
(strain DSM 2380 / Gra Bd 1)
Length = 980
Score = 31.9 bits (69), Expect = 8.6
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +2
Query: 299 NLKKEDDVRRYVVKRLLPAKEGKENAKPRYKAPKIQRLV 415
N + +DD+R V +++LPA E PR +I+RLV
Sbjct: 441 NRQVQDDLRFLVTEKILPALPSAERMNPRAALDEIRRLV 479
>UniRef50_Q2RRC4 Cluster: DNA helicase, putative; n=1; Rhodospirillum
rubrum ATCC 11170|Rep: DNA helicase, putative -
Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255)
Length = 1697
Score = 31.9 bits (69), Expect = 8.6
Identities = 24/64 (37%), Positives = 34/64 (53%)
Frame = +2
Query: 191 ALVIVRKGAQEIPGLTDGEVPRRLGPKRASKIRKLFNLKKEDDVRRYVVKRLLPAKEGKE 370
ALV+V+K A ++ T GE PR L +R+ L D+R+ V R AK G+E
Sbjct: 1629 ALVVVQKAANDL-NPTTGE-PRVLNAWAHWFVRREATLVAIADIRKGVKSRAKRAKAGEE 1686
Query: 371 NAKP 382
A+P
Sbjct: 1687 AAEP 1690
>UniRef50_A1TZN4 Cluster: Flagellar hook-associated protein FlgK;
n=2; Marinobacter|Rep: Flagellar hook-associated protein
FlgK - Marinobacter aquaeolei (strain ATCC 700491 / DSM
11845 / VT8)(Marinobacter hydrocarbonoclasticus (strain
DSM 11845))
Length = 688
Score = 31.9 bits (69), Expect = 8.6
Identities = 24/91 (26%), Positives = 42/91 (46%)
Frame = +2
Query: 32 DKQCFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRK 211
D P +Q VL+ ++ + +G + ++ K + +G + DAN + ++ +
Sbjct: 123 DPTSLPQRQLVLSEAQQLVNRFQGLNQEFIQQRESVKTQMQQG-VKDANTLLKSIAELNL 181
Query: 212 GAQEIPGLTDGEVPRRLGPKRASKIRKLFNL 304
E PGL G P L KR K+R+L L
Sbjct: 182 AISESPGLAQGREPLELMDKRDEKLRQLSEL 212
>UniRef50_A0N0V6 Cluster: Putative regulatory protein; n=2; Azoarcus
anaerobius|Rep: Putative regulatory protein - Azoarcus
anaerobius
Length = 661
Score = 31.9 bits (69), Expect = 8.6
Identities = 19/69 (27%), Positives = 33/69 (47%)
Frame = +2
Query: 89 LMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGEVPRRLGP 268
++ GH YR R +R+ D ++ + L ++R +E G D V R+LG
Sbjct: 582 IIKPGHLAYRMRDRRTPERQHAAASSRDQSIPAIQLDLIRSAIEEFNGNVD-LVGRKLGL 640
Query: 269 KRASKIRKL 295
RA+ R++
Sbjct: 641 SRATVYRRM 649
>UniRef50_Q6NZL8 Cluster: Signal peptide, CUB and EGF-like
domain-containing protein 1 precursor; n=10;
Tetrapoda|Rep: Signal peptide, CUB and EGF-like
domain-containing protein 1 precursor - Mus musculus
(Mouse)
Length = 1018
Score = 31.9 bits (69), Expect = 8.6
Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Frame = -3
Query: 282 LDARLGPRRRGTSPSVSPGISCA---PLRTMTRAKTERLASTMQPRTDLR 142
L + P+R GTS S PG S A P+R R K +QPR+ R
Sbjct: 487 LQGKTLPKRNGTSSSTGPGCSDAPTTPIRQKARFKIRDAKCHLQPRSQER 536
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 492,865,383
Number of Sequences: 1657284
Number of extensions: 9500889
Number of successful extensions: 23402
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 22747
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23377
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 30528237263
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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