Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_E03
         (506 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein S6|Schizo...   190   8e-50
SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein S6|Schizosacch...   190   1e-49
SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|...    25   4.9  
SPAC6B12.05c |||chromatin remodeling complex subunit |Schizosacc...    25   8.6  

>SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein
           S6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 239

 Score =  190 bits (464), Expect = 8e-50
 Identities = 95/134 (70%), Positives = 109/134 (81%), Gaps = 1/134 (0%)
 Frame = +2

Query: 23  GTRDKQCFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVI 202
           G  DKQ FPM QGVL   RVRLL+  GH CYRPRRDGERKRKSVRGCIV  +L+VLAL I
Sbjct: 54  GGNDKQGFPMFQGVLLPHRVRLLLRAGHPCYRPRRDGERKRKSVRGCIVGQDLAVLALAI 113

Query: 203 VRKGAQEIPGLTDGEVPRRLGPKRASKIRKLFNLKKEDDVRRYVVKR-LLPAKEGKENAK 379
           V++G Q+IPGLTD  VP+RLGPKRASKIR+ FNL KEDDVR++V++R ++P KEGK   K
Sbjct: 114 VKQGEQDIPGLTDVTVPKRLGPKRASKIRRFFNLSKEDDVRQFVIRREVVPKKEGK---K 170

Query: 380 PRYKAPKIQRLVTP 421
           P  KAPKIQRLVTP
Sbjct: 171 PYTKAPKIQRLVTP 184


>SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein
           S6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 239

 Score =  190 bits (463), Expect = 1e-49
 Identities = 94/134 (70%), Positives = 109/134 (81%), Gaps = 1/134 (0%)
 Frame = +2

Query: 23  GTRDKQCFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVI 202
           G  DKQ FPM QGVL   RVRLL+  GH CYRPRRDGERKRKSVRGCIV  +L+VLAL I
Sbjct: 54  GGNDKQGFPMFQGVLLPHRVRLLLRAGHPCYRPRRDGERKRKSVRGCIVGQDLAVLALAI 113

Query: 203 VRKGAQEIPGLTDGEVPRRLGPKRASKIRKLFNLKKEDDVRRYVVKR-LLPAKEGKENAK 379
           +++G Q+IPGLTD  VP+RLGPKRASKIR+ FNL KEDDVR++V++R ++P KEGK   K
Sbjct: 114 IKQGEQDIPGLTDVTVPKRLGPKRASKIRRFFNLSKEDDVRQFVIRREVVPKKEGK---K 170

Query: 380 PRYKAPKIQRLVTP 421
           P  KAPKIQRLVTP
Sbjct: 171 PYTKAPKIQRLVTP 184


>SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 310

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 15/72 (20%), Positives = 29/72 (40%), Gaps = 1/72 (1%)
 Frame = -3

Query: 369 SLPSLAGKXXXXXXXXXXXXXFKLNNLRILDARL-GPRRRGTSPSVSPGISCAPLRTMTR 193
           SLPS+ G+                N  + ++  +  P ++ TSP  +   + AP+   + 
Sbjct: 35  SLPSILGEKSEVSKPFKPAVTDPSNAKKEINMAIESPSKKATSPKKATPAAVAPVEATSA 94

Query: 192 AKTERLASTMQP 157
             T    ++M P
Sbjct: 95  VDTSEAVASMTP 106


>SPAC6B12.05c |||chromatin remodeling complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 295

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +2

Query: 86  LLMSKGHSCYRPRRDGERKRKSVRGCIVD 172
           ++ SK +S  +P+  G  KRK+ R  +VD
Sbjct: 97  VVTSKKNSRSKPKNGGASKRKASRRTVVD 125


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,970,302
Number of Sequences: 5004
Number of extensions: 37554
Number of successful extensions: 73
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)