Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_E03
(506 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_03_0207 - 15455163-15455389,15455623-15455895,15455991-154560... 168 3e-42
07_03_1309 + 25669394-25669399,25669520-25669584,25670543-256706... 167 3e-42
02_01_0295 - 1973115-1973404,1974138-1974663 31 0.40
11_04_0329 - 16442298-16443734 29 1.6
03_01_0099 + 778521-778736,779521-779775,779831-779924,780064-78... 29 2.1
10_07_0139 + 13327851-13327880,13327999-13329049,13329089-133296... 28 3.7
05_03_0421 + 13768048-13768879,13769054-13769316,13775572-13775691 28 3.7
09_04_0637 - 19153136-19153513,19153607-19153759,19153857-191546... 28 5.0
03_05_0592 + 25952603-25952983,25953197-25953547 27 8.7
>03_03_0207 -
15455163-15455389,15455623-15455895,15455991-15456099,
15456186-15456243,15457002-15457066,15457190-15457195
Length = 245
Score = 168 bits (408), Expect = 3e-42
Identities = 89/138 (64%), Positives = 105/138 (76%), Gaps = 4/138 (2%)
Frame = +2
Query: 23 GTRDKQCFPMKQGVLTNSRVRLLMSKGHSCYRP--RRDGERKRKSVRGCIVDANLSVLAL 196
G DKQ FPMKQGVLT+ RVRLL+ +G C+R RRDGER+RKSVRGCIV +LSV+ L
Sbjct: 54 GGCDKQGFPMKQGVLTSGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSQDLSVINL 113
Query: 197 VIVRKGAQEIPGLTDGEVPRRLGPKRASKIRKLFNLKKEDDVRRYV--VKRLLPAKEGKE 370
VIV+KG ++PGLTD E PR GPKRASKIRKLFNL K+DDVR+YV +R K GK+
Sbjct: 114 VIVKKGDNDLPGLTDTEKPRMRGPKRASKIRKLFNLAKDDDVRKYVNTYRRTFTTKNGKK 173
Query: 371 NAKPRYKAPKIQRLVTPV 424
+ KAPKIQRLVTP+
Sbjct: 174 VS----KAPKIQRLVTPL 187
>07_03_1309 +
25669394-25669399,25669520-25669584,25670543-25670600,
25670683-25670791,25670872-25671144,25671348-25671589
Length = 250
Score = 167 bits (407), Expect = 3e-42
Identities = 89/138 (64%), Positives = 104/138 (75%), Gaps = 4/138 (2%)
Frame = +2
Query: 23 GTRDKQCFPMKQGVLTNSRVRLLMSKGHSCYRP--RRDGERKRKSVRGCIVDANLSVLAL 196
G DKQ FPMKQGVLT RVRLL+ +G C+R RRDGER+RKSVRGCIV +LSV+ L
Sbjct: 54 GGCDKQGFPMKQGVLTAGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSQDLSVINL 113
Query: 197 VIVRKGAQEIPGLTDGEVPRRLGPKRASKIRKLFNLKKEDDVRRYV--VKRLLPAKEGKE 370
VIV+KG ++PGLTD E PR GPKRASKIRKLFNL K+DDVR+YV +R K GK+
Sbjct: 114 VIVKKGENDLPGLTDTEKPRMRGPKRASKIRKLFNLSKDDDVRKYVNTYRRTFTTKNGKK 173
Query: 371 NAKPRYKAPKIQRLVTPV 424
+ KAPKIQRLVTP+
Sbjct: 174 VS----KAPKIQRLVTPL 187
>02_01_0295 - 1973115-1973404,1974138-1974663
Length = 271
Score = 31.5 bits (68), Expect = 0.40
Identities = 26/90 (28%), Positives = 46/90 (51%), Gaps = 2/90 (2%)
Frame = +2
Query: 101 GHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLT--DGEVPRRLGPKR 274
G S + + G ++ RG + + S AL + GA PG ++P R+G +
Sbjct: 167 GKSIGKGFQGGIKRHNFKRGLMTHGSKSHRALGSI--GAGTTPGRVYKGKKMPGRMGGTK 224
Query: 275 ASKIRKLFNLKKEDDVRRYVVKRLLPAKEG 364
+KIRKL +K ++D++ ++K +P K G
Sbjct: 225 -TKIRKLKIVKIDNDLKVVMIKGAVPGKPG 253
>11_04_0329 - 16442298-16443734
Length = 478
Score = 29.5 bits (63), Expect = 1.6
Identities = 19/57 (33%), Positives = 24/57 (42%)
Frame = -3
Query: 288 RILDARLGPRRRGTSPSVSPGISCAPLRTMTRAKTERLASTMQPRTDLRFLSPSRRG 118
R+L A G + + CAP M LAS+ P + LRF S RRG
Sbjct: 56 RLLAAHAALSPPGAVLRLLASLPCAPNSFMLNITLRALASSPDPASALRFFSLLRRG 112
>03_01_0099 +
778521-778736,779521-779775,779831-779924,780064-780116,
780301-780339,781091-781159,781275-781445,781533-781598,
782533-782601,782993-783060,783308-783430,784095-784228,
784412-784506,784600-784644,784755-784814,785548-785599,
785674-785714,785857-785921,786704-786755,787021-787092
Length = 612
Score = 29.1 bits (62), Expect = 2.1
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = -1
Query: 266 DLDGGELHRQSVQEFPVHLCGQ*PGLRLKG*HQQCNHEQTCVSS 135
D+D ++ + F + GQ P + L G H + NHEQTCV++
Sbjct: 333 DVDNDRINEADKEPFSGNHFGQ-PKI-LSGKHFRLNHEQTCVTA 374
>10_07_0139 +
13327851-13327880,13327999-13329049,13329089-13329648,
13329757-13329904,13330935-13331024,13331148-13331208,
13331301-13331450,13331571-13331629,13332148-13332282,
13333028-13333119,13333210-13333278
Length = 814
Score = 28.3 bits (60), Expect = 3.7
Identities = 13/53 (24%), Positives = 31/53 (58%)
Frame = +2
Query: 257 RLGPKRASKIRKLFNLKKEDDVRRYVVKRLLPAKEGKENAKPRYKAPKIQRLV 415
++ PK+A ++ + +DD+ R V + +P+++ + A+ ++PK +R V
Sbjct: 325 KVEPKKAHCSDRISHKTTQDDMERKVPSKYIPSEKKGKTAESCSRSPKRERRV 377
>05_03_0421 + 13768048-13768879,13769054-13769316,13775572-13775691
Length = 404
Score = 28.3 bits (60), Expect = 3.7
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +2
Query: 233 LTDGEVPRRLGPKRASKIRKLFNLKKEDDVRRYVVKRLLPA 355
+ D E P+ + + + K+ L ED +VVKRLL A
Sbjct: 165 MDDKETPQEMYDRMMILVNKIKGLGSEDMTNHFVVKRLLRA 205
>09_04_0637 -
19153136-19153513,19153607-19153759,19153857-19154675,
19155068-19155174,19155434-19155548
Length = 523
Score = 27.9 bits (59), Expect = 5.0
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +2
Query: 38 QCFPMKQGVLTNSRVRLLMSKGH 106
+CFP+ QGVLT S +L +G+
Sbjct: 476 ECFPVSQGVLTESPRAVLAIRGY 498
>03_05_0592 + 25952603-25952983,25953197-25953547
Length = 243
Score = 27.1 bits (57), Expect = 8.7
Identities = 14/48 (29%), Positives = 25/48 (52%)
Frame = +2
Query: 200 IVRKGAQEIPGLTDGEVPRRLGPKRASKIRKLFNLKKEDDVRRYVVKR 343
+V + E+PGL E + R+ + + +KE +RRY+V+R
Sbjct: 157 VVARVFDELPGLERLEAVTDVENVRSQRALEKAGFRKEGVLRRYIVRR 204
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,659,865
Number of Sequences: 37544
Number of extensions: 278537
Number of successful extensions: 594
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 580
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 590
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1083123860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -