Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_E03
         (506 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48378| Best HMM Match : Ribosomal_S6e (HMM E-Value=0)              217   6e-57
SB_7555| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.72 
SB_56430| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.7  
SB_54546| Best HMM Match : zf-CCHC (HMM E-Value=0.0024)                29   2.2  
SB_5647| Best HMM Match : ResIII (HMM E-Value=1.1)                     29   2.2  
SB_55954| Best HMM Match : TIL (HMM E-Value=0.74)                      29   2.9  
SB_4087| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   3.8  
SB_54650| Best HMM Match : IncA (HMM E-Value=0.84)                     28   3.8  
SB_21994| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.8  
SB_56343| Best HMM Match : RRM_1 (HMM E-Value=3.2e-14)                 28   5.1  
SB_48293| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.1  
SB_48231| Best HMM Match : TUDOR (HMM E-Value=1.9e-28)                 28   5.1  
SB_15632| Best HMM Match : CBM_5_12 (HMM E-Value=2.9)                  28   5.1  
SB_33361| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.1  
SB_3220| Best HMM Match : Ion_trans (HMM E-Value=5.6e-22)              27   6.7  
SB_5842| Best HMM Match : WD40 (HMM E-Value=6.7e-21)                   27   8.9  
SB_43613| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.9  
SB_38326| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.9  
SB_4560| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.9  
SB_1863| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.9  

>SB_48378| Best HMM Match : Ribosomal_S6e (HMM E-Value=0)
          Length = 212

 Score =  217 bits (529), Expect = 6e-57
 Identities = 103/135 (76%), Positives = 116/135 (85%)
 Frame = +2

Query: 23  GTRDKQCFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVI 202
           G  DKQ FPMKQG++TN RVRLL+SKGHSCYRPRR GERKRKSVRGCIVD+ LSVL+LVI
Sbjct: 21  GGNDKQGFPMKQGIMTNGRVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDSQLSVLSLVI 80

Query: 203 VRKGAQEIPGLTDGEVPRRLGPKRASKIRKLFNLKKEDDVRRYVVKRLLPAKEGKENAKP 382
           V+KG Q+IPGLTD  +PRRLGPKR  KIRK+FNL KEDDVR+YV++R LP KEGK   K 
Sbjct: 81  VKKGEQDIPGLTDNTIPRRLGPKRVGKIRKMFNLSKEDDVRQYVIRRPLPEKEGK---KA 137

Query: 383 RYKAPKIQRLVTPVV 427
           + KAPKIQRLVTPVV
Sbjct: 138 KSKAPKIQRLVTPVV 152


>SB_7555| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 175

 Score = 30.7 bits (66), Expect = 0.72
 Identities = 19/52 (36%), Positives = 26/52 (50%)
 Frame = -3

Query: 156 RTDLRFLSPSRRGL*QEWPFDIKRRTRLLVRTPCFIGKHCLSLVPNSCSPGD 1
           RT +R  SP  +GL       IK  ++LL     +  K  + +  NSCSPGD
Sbjct: 12  RTRIRLNSPQIKGL----ELKIKNGSKLLTTRIHYENKRRVYVTSNSCSPGD 59


>SB_56430| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 158

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -3

Query: 105 WPFDIKRRTRLLVRTPCFIGKHCLSLVPNSCSPGD 1
           W   + +  + LV  P       +SL+ NSCSPGD
Sbjct: 8   WKLTLTKGNKTLVPGPPSRSTVSISLISNSCSPGD 42


>SB_54546| Best HMM Match : zf-CCHC (HMM E-Value=0.0024)
          Length = 848

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 13/36 (36%), Positives = 25/36 (69%)
 Frame = +3

Query: 69  LTAVYVS*CQKATLATDHVVTVRGNASLFVVALLML 176
           L+++  + C KATLA D+V++ +GN+   ++  L+L
Sbjct: 472 LSSMLSNGCTKATLACDNVISEKGNSFQRILGSLIL 507


>SB_5647| Best HMM Match : ResIII (HMM E-Value=1.1)
          Length = 1101

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 16/54 (29%), Positives = 28/54 (51%)
 Frame = +2

Query: 224 IPGLTDGEVPRRLGPKRASKIRKLFNLKKEDDVRRYVVKRLLPAKEGKENAKPR 385
           +  + D E P  L    A  ++ + +    DDV+  ++K L+P KEG E+  P+
Sbjct: 9   LDSMRDKEAPAVL----AGLVQNILDEDIPDDVKHRLLKPLVPEKEGPESLDPK 58


>SB_55954| Best HMM Match : TIL (HMM E-Value=0.74)
          Length = 172

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 17/47 (36%), Positives = 25/47 (53%)
 Frame = +2

Query: 152 VRGCIVDANLSVLALVIVRKGAQEIPGLTDGEVPRRLGPKRASKIRK 292
           VR C +D   +VLA  +  + A E  GLT+G V    GP R   +++
Sbjct: 86  VRSCPMDKQSTVLA--VETREACESKGLTEGCVSSAFGPGREEPVQE 130


>SB_4087| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1095

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 16/53 (30%), Positives = 27/53 (50%)
 Frame = +2

Query: 224 IPGLTDGEVPRRLGPKRASKIRKLFNLKKEDDVRRYVVKRLLPAKEGKENAKP 382
           +  + D E P  L    A  ++ + +    DDV+  ++K L+P KEG E+  P
Sbjct: 9   LDSMRDKEAPAVL----AGLVQNILDEDIPDDVKHRLLKPLVPEKEGPESLDP 57


>SB_54650| Best HMM Match : IncA (HMM E-Value=0.84)
          Length = 291

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +2

Query: 242 GEVPRRLGPKRASKIRKLFNLKKEDDVRRYVVK 340
           G    + GP + SKI K+    ++DDV+  VVK
Sbjct: 221 GSEAAKTGPNKLSKIDKVILAVEDDDVQEIVVK 253


>SB_21994| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 159

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = -3

Query: 93  IKRRTRLLVRTPCFIGKHC-LSLVPNSCSPGD 1
           + +  ++LVR P  +     +SL+ NSCSPGD
Sbjct: 12  LTKGNKMLVRGPPLLRSTVSISLISNSCSPGD 43


>SB_56343| Best HMM Match : RRM_1 (HMM E-Value=3.2e-14)
          Length = 273

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 26/80 (32%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
 Frame = +2

Query: 134 ERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGEVPRRLGPKRASK-IRKLFNLKK 310
           + K KSV+   VD + S   L   R  AQE   L DG   ++L    A K + K   L+K
Sbjct: 191 DNKNKSVKATTVDKSASENKLKRKRNSAQE--NLDDGVKRKKLKDAGAMKSLVKELELEK 248

Query: 311 EDDVRRYVVKRLLPAKEGKE 370
             + R  +V+     K+ KE
Sbjct: 249 LVEQRSELVQEKQKKKKEKE 268


>SB_48293| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1135

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = +2

Query: 218 QEIP-GLTDGEVPRRLGPKRASKIRKLFNLKKEDDVRRYVVKRLLPAKEGKENAKP 382
           QEIP  + D E P  L    A  ++ + +    DDV+  ++K L+P K   E A P
Sbjct: 105 QEIPDSMPDKEAPAVL----AGLVQSILDEDIPDDVKHKLLKPLVPVKVWTEEADP 156


>SB_48231| Best HMM Match : TUDOR (HMM E-Value=1.9e-28)
          Length = 1282

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 7/53 (13%)
 Frame = +2

Query: 239  DGEVPRRLGPKRAS-------KIRKLFNLKKEDDVRRYVVKRLLPAKEGKENA 376
            D ++PRR+  +R +       K RK+F+L     +   + KRLLP   G+  A
Sbjct: 1206 DKDIPRRIKQERQNNRYTDHRKFRKVFSLPSRLKIPANLAKRLLPPPPGRNVA 1258


>SB_15632| Best HMM Match : CBM_5_12 (HMM E-Value=2.9)
          Length = 748

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +2

Query: 275 ASKIRKLFNLKKEDDVRRYVVKRLLPAKEGKENAKP 382
           A  ++ + +    DDV+  ++K L+P KEG E+  P
Sbjct: 22  AGLVQNILDEDIPDDVKHRLLKPLVPEKEGPESLDP 57


>SB_33361| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 172

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -2

Query: 109 RVAF*HQETYTAVSQDSLFHREALLVPRAEFLQPGG 2
           R+AF  +  Y+++S     H    L+   EFLQPGG
Sbjct: 21  RLAFLIRHIYSSLSLIRHTHSSLSLIRHIEFLQPGG 56


>SB_3220| Best HMM Match : Ion_trans (HMM E-Value=5.6e-22)
          Length = 256

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +2

Query: 287 RKLFNLKKEDDVRRYVVKRLLPAKEGKENAKPR 385
           RK   L+KE++ RR   K    AKE + + KPR
Sbjct: 202 RKEEQLRKEEEARRQQEKERREAKENELSPKPR 234


>SB_5842| Best HMM Match : WD40 (HMM E-Value=6.7e-21)
          Length = 759

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +1

Query: 310 RRRCASLCCKTPFTCQRGQGKCKTQIQG 393
           R R     C T   C+ G+G C T I+G
Sbjct: 500 RCRSGEETCVTSIRCRSGEGTCVTSIRG 527


>SB_43613| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 158

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -3

Query: 93  IKRRTRLLVRTPCFIGKHCLSLVPNSCSPGD 1
           + +  ++LV  P       +SL+ NSCSPGD
Sbjct: 12  LTKGNKMLVPGPPSRSTVSISLISNSCSPGD 42


>SB_38326| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 104

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = +3

Query: 3  PPGCRNSARGTSSASL 50
          PPGCRNS R T++ ++
Sbjct: 18 PPGCRNSIRSTTTITI 33


>SB_4560| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 156

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -3

Query: 93  IKRRTRLLVRTPCFIGKHCLSLVPNSCSPGD 1
           + +  ++LV  P       +SL+ NSCSPGD
Sbjct: 10  LTKGNKMLVPGPPSRSTVSISLISNSCSPGD 40


>SB_1863| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 136

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = -3

Query: 45 KHCLSLVPNSCSPGD 1
          K CL  + NSCSPGD
Sbjct: 6  KQCLLEISNSCSPGD 20


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,805,097
Number of Sequences: 59808
Number of extensions: 335509
Number of successful extensions: 1858
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1717
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1857
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1111677931
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)