Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_E03
(506 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g31700.1 68417.m04500 40S ribosomal protein S6 (RPS6A) riboso... 168 2e-42
At5g10360.1 68418.m01202 40S ribosomal protein S6 (RPS6B) 166 9e-42
At3g24080.1 68416.m03024 KRR1 family protein contains Pfam PF051... 33 0.11
At1g63450.1 68414.m07175 exostosin family protein contains Pfam ... 29 1.4
At2g43030.1 68415.m05340 ribosomal protein L3 family protein con... 29 1.8
At2g16390.1 68415.m01876 SNF2 domain-containing protein / helica... 28 3.1
At5g41250.1 68418.m05013 exostosin family protein contains Pfam ... 27 5.5
At5g07820.1 68418.m00896 expressed protein 27 5.5
At1g78300.1 68414.m09125 14-3-3 protein GF14 omega (GRF2) identi... 27 5.5
At5g32600.1 68418.m03877 hypothetical protein 27 7.3
At4g09350.1 68417.m01544 DNAJ heat shock N-terminal domain-conta... 27 7.3
At2g43795.1 68415.m05444 hypothetical protein 27 7.3
At4g14160.3 68417.m02185 transport protein, putative similar to ... 27 9.6
At4g14160.2 68417.m02186 transport protein, putative similar to ... 27 9.6
At4g14160.1 68417.m02184 transport protein, putative similar to ... 27 9.6
At3g06860.1 68416.m00814 fatty acid multifunctional protein (MFP... 27 9.6
At1g78170.1 68414.m09109 expressed protein 27 9.6
>At4g31700.1 68417.m04500 40S ribosomal protein S6 (RPS6A) ribosomal
protein S6, Arabidopsis thaliana, PID:g2662469
Length = 250
Score = 168 bits (409), Expect = 2e-42
Identities = 92/138 (66%), Positives = 104/138 (75%), Gaps = 4/138 (2%)
Frame = +2
Query: 23 GTRDKQCFPMKQGVLTNSRVRLLMSKGHSCYRP--RRDGERKRKSVRGCIVDANLSVLAL 196
G DKQ FPMKQGVLT RVRLL+ +G C+R RR GER+RKSVRGCIV +LSVL L
Sbjct: 54 GGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGHGRRTGERRRKSVRGCIVSPDLSVLNL 113
Query: 197 VIVRKGAQEIPGLTDGEVPRRLGPKRASKIRKLFNLKKEDDVRRYV--VKRLLPAKEGKE 370
VIV+KG ++PGLTD E PR GPKRASKIRKLFNLKKEDDVR YV +R K+GKE
Sbjct: 114 VIVKKGENDLPGLTDTEKPRMRGPKRASKIRKLFNLKKEDDVRTYVNTYRRKFTNKKGKE 173
Query: 371 NAKPRYKAPKIQRLVTPV 424
+ KAPKIQRLVTP+
Sbjct: 174 VS----KAPKIQRLVTPL 187
>At5g10360.1 68418.m01202 40S ribosomal protein S6 (RPS6B)
Length = 249
Score = 166 bits (403), Expect = 9e-42
Identities = 90/138 (65%), Positives = 104/138 (75%), Gaps = 4/138 (2%)
Frame = +2
Query: 23 GTRDKQCFPMKQGVLTNSRVRLLMSKGHSCYRP--RRDGERKRKSVRGCIVDANLSVLAL 196
G DKQ FPMKQGVLT RVRLL+ +G C+R RR GER+RKSVRGCIV +LSVL L
Sbjct: 54 GGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGHGRRTGERRRKSVRGCIVSPDLSVLNL 113
Query: 197 VIVRKGAQEIPGLTDGEVPRRLGPKRASKIRKLFNLKKEDDVRRYV--VKRLLPAKEGKE 370
VIV+KG ++PGLTD E PR GPKRASKIRKLFNL KEDDVR+YV +R K+GK+
Sbjct: 114 VIVKKGVSDLPGLTDTEKPRMRGPKRASKIRKLFNLGKEDDVRKYVNTYRRTFTNKKGKK 173
Query: 371 NAKPRYKAPKIQRLVTPV 424
+ KAPKIQRLVTP+
Sbjct: 174 VS----KAPKIQRLVTPL 187
>At3g24080.1 68416.m03024 KRR1 family protein contains Pfam PF05178:
Krr1 family
Length = 638
Score = 33.1 bits (72), Expect = 0.11
Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Frame = +2
Query: 233 LTDGEVPRRLGPKRASKIRKLFNLKKEDDVRRYVVKRL--LPAKEGKENAK 379
+ +G V ++ ++A + K +KKEDDVR+ +KRL + KE KE K
Sbjct: 288 VVEGSVRKKDNARKAQRKNKDERMKKEDDVRKEELKRLKNVKKKEIKEKMK 338
>At1g63450.1 68414.m07175 exostosin family protein contains Pfam
profile: PF03016 exostosin family
Length = 641
Score = 29.5 bits (63), Expect = 1.4
Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Frame = +2
Query: 269 KRASKIRKLFN--LKKEDDVRRYVVKRLLPA-KEGKENAK 379
KR + I KL + L++ +D+R Y+V LLP G NAK
Sbjct: 579 KRVNVIEKLMSKTLREREDMRSYIVHELLPGLVYGDSNAK 618
>At2g43030.1 68415.m05340 ribosomal protein L3 family protein
contains Pfam profile PF00297: ribosomal protein L3
Length = 271
Score = 29.1 bits (62), Expect = 1.8
Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
Frame = +2
Query: 131 GERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLT--DGEVPRRLGPKRASKIRKLFNL 304
G ++ RG + + S AL + GA PG ++P R+G R +KIRKL +
Sbjct: 177 GIKRHHFKRGQMTHGSKSHRALGSI--GAGTTPGRVYKGKKMPGRMGGTR-TKIRKLKIV 233
Query: 305 KKEDDVRRYVVKRLLPAKEG 364
K + ++ ++K LP K G
Sbjct: 234 KVDKELNVVMIKGALPGKPG 253
>At2g16390.1 68415.m01876 SNF2 domain-containing protein / helicase
domain-containing protein low similarity to RAD54
[Drosophila melanogaster] GI:1765914; contains Pfam
profiles PF00271: Helicase conserved C-terminal domain,
PF00176: SNF2 family N-terminal domain
Length = 888
Score = 28.3 bits (60), Expect = 3.1
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +2
Query: 221 EIPGLTDGEVPRRLGPKRASKIRKLFNLKKE 313
E+PGL D V L PK+ ++++KL K++
Sbjct: 620 ELPGLADFTVVLNLSPKQLNEVKKLRREKRK 650
>At5g41250.1 68418.m05013 exostosin family protein contains Pfam
profile: PF03016 exostosin family
Length = 561
Score = 27.5 bits (58), Expect = 5.5
Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = +2
Query: 281 KIRKLFNLKKEDDVRRYVVKRLLPA-KEGKENAK 379
+I K LK++ D++ Y+V++LLP G NAK
Sbjct: 504 EILKAKTLKEKKDMKSYIVQQLLPGLVYGDSNAK 537
>At5g07820.1 68418.m00896 expressed protein
Length = 561
Score = 27.5 bits (58), Expect = 5.5
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = -3
Query: 255 RGTSPSVSPGISCAPLRTMTRAKTERLASTMQPRTDL 145
+ TSPSVSP + + K R++ P+ DL
Sbjct: 161 KSTSPSVSPVVRTVKKTNLVVNKASRISQNKSPKEDL 197
>At1g78300.1 68414.m09125 14-3-3 protein GF14 omega (GRF2) identical
to GF14omega isoform GI:487791 from [Arabidopsis
thaliana]
Length = 259
Score = 27.5 bits (58), Expect = 5.5
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
Frame = +2
Query: 221 EIPGLTDGEVP---RRLGPKRASKIRKLFNLKKEDDVRRYVV--KRLLPAKEGKENAKPR 385
E+ G+ DG + RL P AS K+F LK + D RY+ K K+ E+
Sbjct: 95 ELSGICDGILKLLDSRLIPAAASGDSKVFYLKMKGDYHRYLAEFKTGQERKDAAEHTLAA 154
Query: 386 YKA 394
YK+
Sbjct: 155 YKS 157
>At5g32600.1 68418.m03877 hypothetical protein
Length = 388
Score = 27.1 bits (57), Expect = 7.3
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = +2
Query: 284 IRKLFNLKKEDDVRRYVVKRLLPAKEGKENAKPRYKAPKIQRLVTPV 424
+R+++ KKED RR + +LP + G R P +TPV
Sbjct: 164 LREVYAKKKEDKERRLAERNVLPKRVGSRGDPRRGSLPD---AITPV 207
>At4g09350.1 68417.m01544 DNAJ heat shock N-terminal
domain-containing protein similar to SP|Q45552 Chaperone
protein dnaJ {Bacillus stearothermophilus}; contains
Pfam profile PF00226: DnaJ domain
Length = 249
Score = 27.1 bits (57), Expect = 7.3
Identities = 17/78 (21%), Positives = 35/78 (44%)
Frame = +2
Query: 158 GCIVDANLSVLALVIVRKGAQEIPGLTDGEVPRRLGPKRASKIRKLFNLKKEDDVRRYVV 337
G DA+L + R + P T +P + ++ K+R+++N+ +++ RR+
Sbjct: 112 GVSTDADLEEIKSAYRRLSKEYHPDTTS--LPLKTASEKFMKLREVYNVLSDEETRRFYD 169
Query: 338 KRLLPAKEGKENAKPRYK 391
L ++ K R K
Sbjct: 170 WTLAQEVASRQAEKMRMK 187
>At2g43795.1 68415.m05444 hypothetical protein
Length = 170
Score = 27.1 bits (57), Expect = 7.3
Identities = 21/60 (35%), Positives = 29/60 (48%)
Frame = +2
Query: 113 YRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGEVPRRLGPKRASKIRK 292
YR + D ER K +G +++S RKG +E + E+PR KR S IRK
Sbjct: 54 YRAQLDAERAMKLSKGRNYSSDIS-------RKGRRESSQIESAEIPRGRKAKRES-IRK 105
>At4g14160.3 68417.m02185 transport protein, putative similar to
Swiss-Prot:Q15436 protein transport protein Sec23A [Homo
sapiens]
Length = 620
Score = 26.6 bits (56), Expect = 9.6
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = +1
Query: 187 LSPGHCPQRCTG 222
+ PGH PQRCTG
Sbjct: 264 VQPGHRPQRCTG 275
>At4g14160.2 68417.m02186 transport protein, putative similar to
Swiss-Prot:Q15436 protein transport protein Sec23A [Homo
sapiens]
Length = 772
Score = 26.6 bits (56), Expect = 9.6
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = +1
Query: 187 LSPGHCPQRCTG 222
+ PGH PQRCTG
Sbjct: 264 VQPGHRPQRCTG 275
>At4g14160.1 68417.m02184 transport protein, putative similar to
Swiss-Prot:Q15436 protein transport protein Sec23A [Homo
sapiens]
Length = 621
Score = 26.6 bits (56), Expect = 9.6
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = +1
Query: 187 LSPGHCPQRCTG 222
+ PGH PQRCTG
Sbjct: 264 VQPGHRPQRCTG 275
>At3g06860.1 68416.m00814 fatty acid multifunctional protein (MFP2)
identical to fatty acid multifunctional protein (AtMFP2)
GB:AF123254 [gi:4337027] (Arabidopsis thaliana) (fatty
acid beta-oxidation); contains Pfam profiles PF02737
(3-hydroxyacyl-CoA dehydrogenase, NAD binding domain),
PF00378 (enoyl-CoA hydratase/isomerase family protein),
PF00725 (3-hydroxyacyl-CoA dehydrogenase)
Length = 725
Score = 26.6 bits (56), Expect = 9.6
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Frame = +2
Query: 125 RDGERKRKSVRGCIV--DANLSVLALVIVRKGAQEIPGLTD-GEVPRRL 262
R G K V +V D ++ + ++G ++PG+TD G VPR++
Sbjct: 264 RAGLEKEAEVASQVVKLDTTKGLIHVFFSQRGTAKVPGVTDRGLVPRKI 312
>At1g78170.1 68414.m09109 expressed protein
Length = 221
Score = 26.6 bits (56), Expect = 9.6
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = -1
Query: 377 LHFPCPL-WQVKGVLQHSDAHRLLFLN*IICGF*THAWDLD 258
LH P P WQ KG + SD HR + +I G + DL+
Sbjct: 61 LHTPLPSDWQTKGYSRTSDEHRAYPKDPVIFGQPKMSLDLE 101
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,706,517
Number of Sequences: 28952
Number of extensions: 212383
Number of successful extensions: 521
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 506
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 517
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 908059136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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