Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_E02
(406 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2) id... 233 3e-62
At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4) ne... 233 3e-62
At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly ide... 232 8e-62
At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly ide... 232 8e-62
At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5) ne... 215 1e-56
At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3) ne... 215 1e-56
At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly ide... 208 1e-54
At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly iden... 107 4e-24
At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly iden... 105 1e-23
At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) near... 104 3e-23
At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) near... 104 3e-23
At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly iden... 103 5e-23
At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly iden... 102 8e-23
At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical t... 102 1e-22
At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly iden... 101 1e-22
At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8) ide... 101 2e-22
At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin... 86 7e-18
At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin... 86 1e-17
At4g14510.1 68417.m02236 expressed protein contains Pfam domain,... 30 0.68
At2g17820.1 68415.m02064 histidine kinase 1 99% identical to GP:... 29 1.2
At1g75400.1 68414.m08759 expressed protein 28 2.1
At1g25510.1 68414.m03168 aspartyl protease family protein contai... 28 2.1
At5g04660.1 68418.m00474 cytochrome P450, putative cytochrome P4... 27 3.6
At3g13330.1 68416.m01678 expressed protein 27 3.6
At1g18260.1 68414.m02277 suppressor of lin-12-like protein-relat... 27 3.6
At5g47020.1 68418.m05795 glycine-rich protein strong similarity ... 27 6.3
At3g44340.1 68416.m04764 sec23/sec24 transport family protein co... 27 6.3
At3g11960.2 68416.m01476 cleavage and polyadenylation specificit... 27 6.3
At3g11960.1 68416.m01475 cleavage and polyadenylation specificit... 27 6.3
At5g26760.2 68418.m03189 expressed protein 26 8.3
At5g26760.1 68418.m03188 expressed protein 26 8.3
At3g21220.1 68416.m02682 mitogen-activated protein kinase kinase... 26 8.3
At3g11760.1 68416.m01443 expressed protein 26 8.3
At3g10570.1 68416.m01268 cytochrome P450, putative similar to cy... 26 8.3
At2g35610.1 68415.m04365 expressed protein 26 8.3
>At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2)
identical to tubulin alpha-2/alpha-4 chain SP|P29510
GB:P29510 from [Arabidopsis thaliana]
Length = 450
Score = 233 bits (570), Expect = 3e-62
Identities = 98/108 (90%), Positives = 108/108 (100%)
Frame = +2
Query: 83 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 262
MRECIS+H+GQAG+Q+GNACWELYCLEHGIQPDGQMP+DKT+GGGDD+FNTFFSETGAGK
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGK 60
Query: 263 HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHY 406
HVPRAVFVDLEPTV+DEVRTGTYRQLFHPEQLI+GKEDAANN+ARGHY
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHY 108
>At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4)
nearly identical to SP:P29510 Tubulin alpha-2/alpha-4
chain from [Arabidopsis thaliana]
Length = 450
Score = 233 bits (570), Expect = 3e-62
Identities = 98/108 (90%), Positives = 108/108 (100%)
Frame = +2
Query: 83 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 262
MRECIS+H+GQAG+Q+GNACWELYCLEHGIQPDGQMP+DKT+GGGDD+FNTFFSETGAGK
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGK 60
Query: 263 HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHY 406
HVPRAVFVDLEPTV+DEVRTGTYRQLFHPEQLI+GKEDAANN+ARGHY
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHY 108
>At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 450
Score = 232 bits (567), Expect = 8e-62
Identities = 98/108 (90%), Positives = 107/108 (99%)
Frame = +2
Query: 83 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 262
MRECIS+H+GQAG+Q+GNACWELYCLEHGIQPDGQMP DKT+GGGDD+FNTFFSETGAGK
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPGDKTVGGGDDAFNTFFSETGAGK 60
Query: 263 HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHY 406
HVPRAVFVDLEPTV+DEVRTGTYRQLFHPEQLI+GKEDAANN+ARGHY
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHY 108
>At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 427
Score = 232 bits (567), Expect = 8e-62
Identities = 98/108 (90%), Positives = 107/108 (99%)
Frame = +2
Query: 83 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 262
MRECIS+H+GQAG+Q+GNACWELYCLEHGIQPDGQMP DKT+GGGDD+FNTFFSETGAGK
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPGDKTVGGGDDAFNTFFSETGAGK 60
Query: 263 HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHY 406
HVPRAVFVDLEPTV+DEVRTGTYRQLFHPEQLI+GKEDAANN+ARGHY
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHY 108
>At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 215 bits (524), Expect = 1e-56
Identities = 91/108 (84%), Positives = 102/108 (94%)
Frame = +2
Query: 83 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 262
MRE IS+H+GQAG+Q+GN+CWELYCLEHGIQPDG MP+D T+G D+FNTFFSETGAGK
Sbjct: 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGMMPSDTTVGVAHDAFNTFFSETGAGK 60
Query: 263 HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHY 406
HVPRAVFVDLEPTV+DEVRTGTYRQLFHPEQLI+GKEDAANN+ARGHY
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHY 108
>At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 215 bits (524), Expect = 1e-56
Identities = 91/108 (84%), Positives = 102/108 (94%)
Frame = +2
Query: 83 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 262
MRE IS+H+GQAG+Q+GN+CWELYCLEHGIQPDG MP+D T+G D+FNTFFSETGAGK
Sbjct: 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGMMPSDTTVGVAHDAFNTFFSETGAGK 60
Query: 263 HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHY 406
HVPRAVFVDLEPTV+DEVRTGTYRQLFHPEQLI+GKEDAANN+ARGHY
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHY 108
>At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly
identical to SP|P11139 Tubulin alpha-1 chain
{Arabidopsis thaliana}
Length = 450
Score = 208 bits (508), Expect = 1e-54
Identities = 87/108 (80%), Positives = 101/108 (93%)
Frame = +2
Query: 83 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 262
MRE IS+H+GQAG+Q+GN+CWELYCLEHGIQPDG MP+D T+G D+FNTFFSET +G+
Sbjct: 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGTMPSDSTVGACHDAFNTFFSETSSGQ 60
Query: 263 HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHY 406
HVPRAVF+DLEPTV+DEVRTGTYRQLFHPEQLI+GKEDAANN+ARGHY
Sbjct: 61 HVPRAVFLDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHY 108
>At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly
identical to SP|P29514 Tubulin beta-6 chain {Arabidopsis
thaliana}
Length = 449
Score = 107 bits (256), Expect = 4e-24
Identities = 48/111 (43%), Positives = 69/111 (62%), Gaps = 3/111 (2%)
Frame = +2
Query: 83 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGD---DSFNTFFSETG 253
MRE + + GQ G QIG+ WE+ C EHGI P G+ +G D + N +++E
Sbjct: 1 MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRY-----VGNSDLQLERVNVYYNEAS 55
Query: 254 AGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHY 406
G++VPRA+ +DLEP +D VRTG Y Q+F P+ + G+ A NN+A+GHY
Sbjct: 56 CGRYVPRAILMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHY 106
>At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly
identical to SP|P12411 Tubulin beta-1 chain {Arabidopsis
thaliana}
Length = 447
Score = 105 bits (252), Expect = 1e-23
Identities = 46/108 (42%), Positives = 67/108 (62%)
Frame = +2
Query: 83 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 262
MRE + V GQ G QIG+ WE+ C EHG+ P G+ D + N +++E G+
Sbjct: 1 MREILHVQGGQCGNQIGSKFWEVICDEHGVDPTGRYNGDSA-DLQLERINVYYNEASGGR 59
Query: 263 HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHY 406
+VPRAV +DLEP +D +R+G Y Q+F P+ + G+ A NN+A+GHY
Sbjct: 60 YVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHY 107
>At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 104 bits (249), Expect = 3e-23
Identities = 46/108 (42%), Positives = 65/108 (60%)
Frame = +2
Query: 83 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 262
MRE + + GQ G QIG WE+ C EHGI P G+ D + + N +++E G+
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDPTGRYTGDSDLQL--ERINVYYNEASCGR 58
Query: 263 HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHY 406
VPRAV +DLEP +D +R+G Y Q F P+ + G+ A NN+A+GHY
Sbjct: 59 FVPRAVLMDLEPGTMDSLRSGPYGQTFRPDNFVFGQSGAGNNWAKGHY 106
>At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 104 bits (249), Expect = 3e-23
Identities = 46/108 (42%), Positives = 65/108 (60%)
Frame = +2
Query: 83 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 262
MRE + + GQ G QIG WE+ C EHGI P G+ D + + N +++E G+
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDPTGRYTGDSDLQL--ERINVYYNEASCGR 58
Query: 263 HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHY 406
VPRAV +DLEP +D +R+G Y Q F P+ + G+ A NN+A+GHY
Sbjct: 59 FVPRAVLMDLEPGTMDSLRSGPYGQTFRPDNFVFGQSGAGNNWAKGHY 106
>At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly
identical to SP|P29517 Tubulin beta-9 chain {Arabidopsis
thaliana}
Length = 444
Score = 103 bits (247), Expect = 5e-23
Identities = 47/108 (43%), Positives = 66/108 (61%)
Frame = +2
Query: 83 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 262
MRE + + GQ G QIG WE+ C EHGI GQ D + + N +F+E GK
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVICGEHGIDQTGQSCGDTDLQL--ERINVYFNEASGGK 58
Query: 263 HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHY 406
+VPRAV +DLEP +D +R+G + Q+F P+ + G+ A NN+A+GHY
Sbjct: 59 YVPRAVLMDLEPGTMDSLRSGPFGQIFRPDNFVFGQSGAGNNWAKGHY 106
>At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly
identical to SP|P29513 Tubulin beta-5 chain {Arabidopsis
thaliana}
Length = 449
Score = 102 bits (245), Expect = 8e-23
Identities = 45/108 (41%), Positives = 67/108 (62%)
Frame = +2
Query: 83 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 262
MRE + + GQ G QIG+ WE+ C EHGI G+ D T + N +++E G+
Sbjct: 1 MREILHIQGGQCGNQIGSKFWEVICDEHGIDSTGRYSGD-TADLQLERINVYYNEASGGR 59
Query: 263 HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHY 406
+VPRAV +DLEP +D +R+G + Q+F P+ + G+ A NN+A+GHY
Sbjct: 60 YVPRAVLMDLEPGTMDSIRSGPFGQIFRPDNFVFGQSGAGNNWAKGHY 107
>At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical to
GB:M84704 SP|P29515 Tubulin beta-7 chain {Arabidopsis
thaliana}
Length = 449
Score = 102 bits (244), Expect = 1e-22
Identities = 46/108 (42%), Positives = 67/108 (62%)
Frame = +2
Query: 83 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 262
MRE + + GQ G QIG+ WE+ LEHGI G+ D + + N +++E G+
Sbjct: 1 MREILHIQGGQCGNQIGSKFWEVVNLEHGIDQTGRYVGDSELQL--ERVNVYYNEASCGR 58
Query: 263 HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHY 406
+VPRAV +DLEP +D VR+G Y Q+F P+ + G+ A NN+A+GHY
Sbjct: 59 YVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHY 106
>At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly
identical to SP|P24636 Tubulin beta-4 chain {Arabidopsis
thaliana}
Length = 444
Score = 101 bits (243), Expect = 1e-22
Identities = 46/108 (42%), Positives = 66/108 (61%)
Frame = +2
Query: 83 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 262
MRE + + GQ G QIG WE+ C EHGI GQ D + + + +F+E GK
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGQYVGDSPLQL--ERIDVYFNEASGGK 58
Query: 263 HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHY 406
+VPRAV +DLEP +D +R+G + Q+F P+ + G+ A NN+A+GHY
Sbjct: 59 YVPRAVLMDLEPGTMDSLRSGPFGQIFRPDNFVFGQSGAGNNWAKGHY 106
>At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8)
identical to SP|P29516 Tubulin beta-8 chain {Arabidopsis
thaliana}; supporting cDNA gi|15451225|gb|AY054693.1|
Length = 449
Score = 101 bits (242), Expect = 2e-22
Identities = 45/108 (41%), Positives = 65/108 (60%)
Frame = +2
Query: 83 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 262
MRE + + GQ G QIG WE+ C EHGI G+ + + + N +++E G+
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYQGENDLQL--ERVNVYYNEASCGR 58
Query: 263 HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHY 406
VPRAV +DLEP +D VR+G Y Q+F P+ + G+ A NN+A+GHY
Sbjct: 59 FVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHY 106
>At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin
(TUBG1) identical to SP|P38557 Tubulin gamma-1 chain
(Gamma-1 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 86.2 bits (204), Expect = 7e-18
Identities = 43/109 (39%), Positives = 63/109 (57%), Gaps = 2/109 (1%)
Frame = +2
Query: 86 RECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGKH 265
RE I++ VGQ G QIG W+ CLEHGI DG + T GG D + FF + +
Sbjct: 3 REIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFATQGG--DRKDVFFYQADDQHY 60
Query: 266 VPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKE--DAANNYARGHY 406
+PRA+ +DLEP V++ ++ G YR L++ E + A NN+A G++
Sbjct: 61 IPRALLIDLEPRVINGIQNGDYRNLYNHENIFVADHGGGAGNNWASGYH 109
>At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin
(TUBG2) identical to SP|P38558 Tubulin gamma-2 chain
(Gamma-2 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 85.8 bits (203), Expect = 1e-17
Identities = 43/109 (39%), Positives = 63/109 (57%), Gaps = 2/109 (1%)
Frame = +2
Query: 86 RECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGKH 265
RE I++ VGQ G QIG W+ CLEHGI DG + T GG D + FF + +
Sbjct: 3 REIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFATQGG--DRKDVFFYQADDQHY 60
Query: 266 VPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKE--DAANNYARGHY 406
+PRA+ +DLEP V++ ++ G YR L++ E + A NN+A G++
Sbjct: 61 IPRALLIDLEPRVINGIQNGEYRNLYNHENIFLSDHGGGAGNNWASGYH 109
>At4g14510.1 68417.m02236 expressed protein contains Pfam domain,
PF04581: Protein of unknown function (DUF578)
Length = 932
Score = 29.9 bits (64), Expect = 0.68
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = +2
Query: 161 EHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVD 310
E GIQ +G + ++ + G D +T F + A P FV+L+ +D
Sbjct: 881 EGGIQANGSL-SETDVEFGSDESDTDFGDNSASSTTPETTFVELQNEELD 929
>At2g17820.1 68415.m02064 histidine kinase 1 99% identical to
GP:4586626
Length = 1207
Score = 29.1 bits (62), Expect = 1.2
Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Frame = -1
Query: 232 VEGVVSTPDGLVSWHLTIR--LDAVLKAIQLP 143
+ G+ PDG SWH+T+ +D+ L + LP
Sbjct: 272 IAGISQVPDGEASWHVTVSKYMDSPLLSAALP 303
>At1g75400.1 68414.m08759 expressed protein
Length = 455
Score = 28.3 bits (60), Expect = 2.1
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +3
Query: 198 TRPSGVETTPSTRSSARPELASTFPVPSSS 287
T P G TP+++ SA PE+++ VP SS
Sbjct: 83 TPPDGHLGTPASQKSATPEMSTNSMVPPSS 112
>At1g25510.1 68414.m03168 aspartyl protease family protein contains
Pfam domain, PF00026: eukaryotic aspartyl protease
Length = 483
Score = 28.3 bits (60), Expect = 2.1
Identities = 12/47 (25%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Frame = -1
Query: 361 DKLFWMKQLSVCASADLVNY--SGFKIDEDGTGNVLASSGLAEERVE 227
D +++ + +L+ S F++DE G+G ++ SG A R++
Sbjct: 326 DTFYYLGLTGISVGGELLQIPQSSFEMDESGSGGIIIDSGTAVTRLQ 372
>At5g04660.1 68418.m00474 cytochrome P450, putative cytochrome P450
77A3p, Glycine max., PIR:T05948
Length = 512
Score = 27.5 bits (58), Expect = 3.6
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +2
Query: 248 TGAGKHVPRAVFVDLE-PTVVDEVRTGTYRQLFHPEQLITGKEDA 379
T AG +P V V++ P + ++ R + F P++ + GKEDA
Sbjct: 392 TLAGYDIPAGVNVEVYLPGISEDPRIWNNPKKFDPDRFMLGKEDA 436
>At3g13330.1 68416.m01678 expressed protein
Length = 1711
Score = 27.5 bits (58), Expect = 3.6
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +3
Query: 60 KFKKLNTKCVSASLYTLAKPESRSEMPAGSCIALSTASNL 179
++ +L +KCV + L KP+ + + GSC LS+ S L
Sbjct: 938 RWPQLLSKCVLSLTENLRKPDVQEYVVLGSCAILSSHSVL 977
>At1g18260.1 68414.m02277 suppressor of lin-12-like protein-related
/ sel-1 protein-related similar to Sel-1 homolog
precursor (Suppressor of lin-12-like protein)
(Sel-1L)(SP:Q9UBV2) {Homo sapiens}
Length = 678
Score = 27.5 bits (58), Expect = 3.6
Identities = 12/45 (26%), Positives = 23/45 (51%)
Frame = +2
Query: 218 DDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPE 352
+D N+ + G G+ F + EP +E+ G++R +F P+
Sbjct: 34 NDDLNSGGDDNGVGESSDFDEFGESEPKSEEELDPGSWRSIFEPD 78
>At5g47020.1 68418.m05795 glycine-rich protein strong similarity to
unknown protein (emb|CAB87688.1)
Length = 1417
Score = 26.6 bits (56), Expect = 6.3
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Frame = +3
Query: 72 LNTKCVSASLYTLAKPESRSEMPAGSCIALSTASNLMVRCQ-LTRPSGVETTPSTRSSAR 248
++T C S S Y + + ES + + ST+S + V CQ L + TT + S+ R
Sbjct: 12 VSTPCFSLSQYGVTEFESSVRLFSDEASGNSTSSPISVTCQDLDGVGSLNTTCTLNSNLR 71
>At3g44340.1 68416.m04764 sec23/sec24 transport family protein
contains Pfam domains PF04811: Sec23/Sec24 trunk domain,
PF04815: Sec23/Sec24 helical domain and PF04810:
Sec23/Sec24 zinc finger
Length = 1096
Score = 26.6 bits (56), Expect = 6.3
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = -1
Query: 280 DGTGNVLASSGLAEERVEGVVSTPDGLVSWHLTIR 176
D GN+L S + E+R G S D LVS H I+
Sbjct: 1058 DPAGNMLFQSYMVEDRGSGGASYVDFLVSVHRQIQ 1092
>At3g11960.2 68416.m01476 cleavage and polyadenylation specificity
factor (CPSF) A subunit C-terminal domain-containing
protein similar to Splicing factor 3B subunit 3
(Spliceosome associatedprotein 130) (SAP 130) (SF3b130)
(Pre-mRNA splicing factor SF3b 130kDa subunit)
(SP:Q15393) [Homo sapiens]; contains Pfam PF03178 : CPSF
A subunit region
Length = 1329
Score = 26.6 bits (56), Expect = 6.3
Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = -1
Query: 334 SVCASADLVNYSGFKIDEDGTGNV-LASS 251
S+C+S D +Y G K+DE T + LASS
Sbjct: 989 SLCSSPDDYSYDGIKLDEAETWQLRLASS 1017
>At3g11960.1 68416.m01475 cleavage and polyadenylation specificity
factor (CPSF) A subunit C-terminal domain-containing
protein similar to Splicing factor 3B subunit 3
(Spliceosome associatedprotein 130) (SAP 130) (SF3b130)
(Pre-mRNA splicing factor SF3b 130kDa subunit)
(SP:Q15393) [Homo sapiens]; contains Pfam PF03178 : CPSF
A subunit region
Length = 1379
Score = 26.6 bits (56), Expect = 6.3
Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = -1
Query: 334 SVCASADLVNYSGFKIDEDGTGNV-LASS 251
S+C+S D +Y G K+DE T + LASS
Sbjct: 1047 SLCSSPDDYSYDGIKLDEAETWQLRLASS 1075
>At5g26760.2 68418.m03189 expressed protein
Length = 735
Score = 26.2 bits (55), Expect = 8.3
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Frame = -1
Query: 232 VEGVVSTPDGLVSWHLTIRLDAVLKAIQLPAGISDLDSGLANVYRD-ALTHFVLSF 68
V+G+ S ++ L L V+ ++LP IS+L+ GL ++ +LT V SF
Sbjct: 613 VDGLSSEIKQTIAGCLARALPRVVTHLRLPIAISELEKGLGSLLETMSLTGAVPSF 668
>At5g26760.1 68418.m03188 expressed protein
Length = 430
Score = 26.2 bits (55), Expect = 8.3
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Frame = -1
Query: 232 VEGVVSTPDGLVSWHLTIRLDAVLKAIQLPAGISDLDSGLANVYRD-ALTHFVLSF 68
V+G+ S ++ L L V+ ++LP IS+L+ GL ++ +LT V SF
Sbjct: 308 VDGLSSEIKQTIAGCLARALPRVVTHLRLPIAISELEKGLGSLLETMSLTGAVPSF 363
>At3g21220.1 68416.m02682 mitogen-activated protein kinase kinase
(MAPKK), putative (MKK5) identical to GB:BAA28831 from
[Arabidopsis thaliana]; mitogen-activated protein kinase
kinase (MAPKK) family, PMID:12119167
Length = 348
Score = 26.2 bits (55), Expect = 8.3
Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Frame = +3
Query: 204 PSGVETTPSTRSSARPELASTFPVPSSSILNPL*L---TRSALAHTDSCFIQNNLSLVRR 374
PSGV + R RP+L+ P ++ PL L + S+ A S I N+S +
Sbjct: 7 PSGVASPMKNRLRKRPDLSLPLPHRDVALAVPLPLPPPSSSSSAPASSSAISTNISAAKS 66
Query: 375 MPQ 383
+ +
Sbjct: 67 LSE 69
>At3g11760.1 68416.m01443 expressed protein
Length = 702
Score = 26.2 bits (55), Expect = 8.3
Identities = 17/51 (33%), Positives = 21/51 (41%)
Frame = +3
Query: 147 SCIALSTASNLMVRCQLTRPSGVETTPSTRSSARPELASTFPVPSSSILNP 299
+C+A T L V L + TTP T SA P+PS S P
Sbjct: 154 ACVASETHPLLFVSLSLLE---LRTTPETSDSAAQTAVVPLPLPSPSPQQP 201
>At3g10570.1 68416.m01268 cytochrome P450, putative similar to
cytochrome P450 77A3 GB:O48928 [Glycine max]
Length = 513
Score = 26.2 bits (55), Expect = 8.3
Identities = 14/45 (31%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Frame = +2
Query: 248 TGAGKHVPRAVFVDLE-PTVVDEVRTGTYRQLFHPEQLITGKEDA 379
T AG VP + V+ P + ++ + + + F+P++ I+GKE+A
Sbjct: 393 TVAGYDVPVGINVEFYLPGINEDPKLWSDPKKFNPDRFISGKEEA 437
>At2g35610.1 68415.m04365 expressed protein
Length = 644
Score = 26.2 bits (55), Expect = 8.3
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -3
Query: 197 QLASDHQVGCRAQGNTAPSR 138
QL + + GC A NT+PSR
Sbjct: 529 QLCQEGKEGCEASNNTSPSR 548
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,734,522
Number of Sequences: 28952
Number of extensions: 214993
Number of successful extensions: 756
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 718
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 745
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 595686720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -