Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_E01
         (550 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    22   4.1  
AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory recept...    22   4.1  
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    21   9.4  

>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +2

Query: 467 RFRF*TEETVLRIAVFVYFA 526
           RFR  TE T+L + + V FA
Sbjct: 354 RFRHITEITILTVQLIVEFA 373


>AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory
          receptor candidate 59 protein.
          Length = 489

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +2

Query: 5  EEKIKKQE*FDFAIDFSYSY 64
          +EKIK+QE   F   + Y+Y
Sbjct: 28 DEKIKRQERHSFYKIYKYTY 47


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
            candidate 46 protein.
          Length = 1451

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +1

Query: 67   ITSIKTMFIVIYKQIG 114
            ++ IK  F+V+ +QIG
Sbjct: 1262 VSMIKARFVVVNQQIG 1277


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,564
Number of Sequences: 336
Number of extensions: 2792
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13516233
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)