Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_E01
         (550 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchang...    27   1.8  
SPBC28F2.08c |||HRD ubiquitin ligase complex subunit |Schizosacc...    26   3.2  
SPAC1F7.03 |pkd2||TRP-like ion channel |Schizosaccharomyces pomb...    26   4.2  

>SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchange
           factor Sec73 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -3

Query: 437 NKDLDYACTL*FLKFYLSNLTVKIEHLFFSFSKAPSFCN 321
           N+ LD+   L  LK +L   T +I+ +  +FSK    CN
Sbjct: 404 NRPLDFCLRLFLLKSHLPKETQQIDRVINAFSKRYFECN 442


>SPBC28F2.08c |||HRD ubiquitin ligase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 713

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -1

Query: 334 LVSAITNSWKKAIMAVVDIYYLV*KYLS*CYY 239
           L+ A++N   ++++ + DIYY     LS  YY
Sbjct: 375 LIRAVSNGHLESVLHIADIYYGSNNQLSIAYY 406


>SPAC1F7.03 |pkd2||TRP-like ion channel |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 710

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 15/49 (30%), Positives = 26/49 (53%)
 Frame = -3

Query: 287 GGYILFGIKIFIIMLLSREEQGIRLYGINAARICPLA*RISI*NIMILF 141
           G +IL   + F +  L+R+  GI  + +NA  +  L   I I  +++LF
Sbjct: 535 GSFILVMCQAFYVEELARQVIGIIFFALNAITMLLLILGIFIRTLIVLF 583


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,135,139
Number of Sequences: 5004
Number of extensions: 41547
Number of successful extensions: 82
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)