Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_E01
         (550 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47115| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_8391| Best HMM Match : Dynamin_N (HMM E-Value=9.7e-18)              27   7.6  

>SB_47115| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 830

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = -2

Query: 189 MPFSLTYFHLEYYDFIYVKT*QILGTYLFVYNNK 88
           +PF+  Y+ + +  FI+V     LG YL+V + +
Sbjct: 122 LPFTYQYYFIAWVAFIFVVCMTFLGAYLYVLHKR 155


>SB_8391| Best HMM Match : Dynamin_N (HMM E-Value=9.7e-18)
          Length = 957

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = -1

Query: 469 PIVNFSFGFRIIKTWIMLVRY 407
           PIVNFS   R  KTW  L R+
Sbjct: 538 PIVNFSLMSRTFKTWDQLKRF 558


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,474,092
Number of Sequences: 59808
Number of extensions: 260604
Number of successful extensions: 413
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 364
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 408
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1264269032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)