Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_D24
(458 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1D4.12 |rad15|rhp3|transcription factor TFIIH complex subuni... 30 0.20
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 28 0.79
SPBC365.12c |ish1||LEA domain protein|Schizosaccharomyces pombe|... 25 4.2
SPCC4B3.15 |mid1|dmf1|medial ring protein Mid1|Schizosaccharomyc... 25 4.2
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom... 25 5.6
SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr ... 25 7.3
SPBC115.03 ||SPBC839.18c|gfo/idh/mocA family oxidoreductase |Sch... 25 7.3
SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 24 9.7
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra... 24 9.7
SPBC2G2.08 |ade9||C-1-tetrahydrofolatesynthase/methylenetetrahyd... 24 9.7
>SPAC1D4.12 |rad15|rhp3|transcription factor TFIIH complex subunit
Rad15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 772
Score = 29.9 bits (64), Expect = 0.20
Identities = 12/43 (27%), Positives = 23/43 (53%)
Frame = -1
Query: 275 RTPTFSHFVERYVQFTLHTFQLLLVISSAPRVFFNEIKDVLLV 147
R F F++R+V++ ++L VI+ P F +KD+ +
Sbjct: 324 RAEHFIAFLKRFVEYLKTRMKVLHVIAETPTSFLQHVKDITFI 366
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 27.9 bits (59), Expect = 0.79
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +1
Query: 46 SSQPSLQLTLFTEMYIHPFSTDLISYRFPSSSMATSRTSFIS 171
SS+PS+ T + +S+ + SY P++S S TSF S
Sbjct: 81 SSEPSIFSESATPSETNSYSSPVSSYSDPATSQLPSSTSFFS 122
>SPBC365.12c |ish1||LEA domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 684
Score = 25.4 bits (53), Expect = 4.2
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = +3
Query: 336 AEREKQRLLHHARATAIRKAWHREREALRNGFGGSIDW 449
A +EK+ +L ++R+ +E +AL + G + DW
Sbjct: 148 AAKEKKGILEKLSPASLRETAAKEYDALTSKLGNTGDW 185
>SPCC4B3.15 |mid1|dmf1|medial ring protein Mid1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 920
Score = 25.4 bits (53), Expect = 4.2
Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = -1
Query: 284 VCVRTPTFSHFVERYVQFTLHTFQLLLVISSAPRVFFNE-IKDVLLVA 144
V +R+ + + E+ Q+ L TFQL + S P V F+E + ++ LVA
Sbjct: 821 VVLRSKQLNFYAEKGGQY-LDTFQLSKTVVSIPMVNFSEAVSNLGLVA 867
>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1375
Score = 25.0 bits (52), Expect = 5.6
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = -3
Query: 279 RKNAHFQSLRGTLRSIYPAYVSAVACHQQRATC 181
RK AHF+S R L ++Y V HQ C
Sbjct: 1063 RKIAHFESRRRYLTNLYEHIVLKAESHQICIIC 1095
>SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 977
Score = 24.6 bits (51), Expect = 7.3
Identities = 11/30 (36%), Positives = 14/30 (46%)
Frame = -3
Query: 291 FSRLRKNAHFQSLRGTLRSIYPAYVSAVAC 202
F +LRKN HF S+ V+ AC
Sbjct: 9 FHKLRKNEHFLKYSAIFYSLLKPVVALFAC 38
>SPBC115.03 ||SPBC839.18c|gfo/idh/mocA family oxidoreductase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 368
Score = 24.6 bits (51), Expect = 7.3
Identities = 12/54 (22%), Positives = 23/54 (42%)
Frame = +3
Query: 57 VPSANAIYRDVYTSVFNRSHLLPFSFVVHGDQQDVFYFVKEDTWRAADDKQQLK 218
VP+ YRD Y +VF F + DQ + E +++++ ++
Sbjct: 314 VPTVQGNYRDFYDAVFEEILKKANEFPIKSDQVLAVEKIMEAAYKSSESSSSIQ 367
>SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 646
Score = 24.2 bits (50), Expect = 9.7
Identities = 12/49 (24%), Positives = 22/49 (44%)
Frame = -1
Query: 386 NSGSTSVMQKPLFLTFCAGPVSKVHDTCPSVYFHVCVRTPTFSHFVERY 240
N+ + V KPL+++FC +T S F ++ F + +Y
Sbjct: 14 NTSAFLVKSKPLYISFCTCKAYFEDNTSLSRRFFSAKKSLQFKSLIRKY 62
>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
transporting Cta4 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1211
Score = 24.2 bits (50), Expect = 9.7
Identities = 11/38 (28%), Positives = 18/38 (47%)
Frame = +1
Query: 10 GSSCHVILEDAQSSQPSLQLTLFTEMYIHPFSTDLISY 123
GS + D S Q ++L F +Y+ PF+ + Y
Sbjct: 2 GSKALITSPDISSGQLYIKLPTFFHLYVWPFALFVYPY 39
>SPBC2G2.08 |ade9||C-1-
tetrahydrofolatesynthase/methylenetetrahydrofolatedehydr
ogenase/methylenetetrahydrofolatecyclohydrolase/formylte
trahydrofolatesynthetase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 969
Score = 24.2 bits (50), Expect = 9.7
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +1
Query: 370 LVLPLLGKPGIANAKHCAMGSVVPSIGL 453
LV+ LGKP + GSVV +G+
Sbjct: 238 LVIAALGKPEFVRGEWLKPGSVVVDVGI 265
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,842,597
Number of Sequences: 5004
Number of extensions: 35563
Number of successful extensions: 110
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 172312850
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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