Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_D24
(458 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0061 + 5342338-5342401,5343025-5343131,5343962-5344009,534... 28 3.1
04_01_0628 - 8266494-8266501,8266578-8266875,8268055-8268313,826... 28 4.2
04_04_1586 - 34621945-34623366 27 5.5
05_07_0260 - 28739035-28739085,28739316-28739596,28740545-287405... 27 7.3
01_05_0788 + 25223373-25223405,25224285-25224373,25224496-252246... 27 7.3
01_05_0357 - 21344146-21344575,21344629-21345455,21345782-21345784 27 7.3
11_06_0210 + 21296782-21296909,21297135-21298844,21299127-212994... 27 9.6
10_08_0403 - 17635530-17635578,17635737-17635820,17636110-176362... 27 9.6
10_05_0017 + 8037822-8038211 27 9.6
05_04_0035 + 17378541-17381276 27 9.6
>03_02_0061 +
5342338-5342401,5343025-5343131,5343962-5344009,
5344297-5344399,5345152-5345234,5345271-5346089,
5346189-5346338,5346420-5346797
Length = 583
Score = 28.3 bits (60), Expect = 3.1
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -2
Query: 265 LSVTSWNVTFNLPCIRFSCCLSSAARHV 182
LS++S+NV +N PC S S+ RH+
Sbjct: 239 LSLSSYNVDYNFPCSLLSDGRGSSLRHL 266
>04_01_0628 -
8266494-8266501,8266578-8266875,8268055-8268313,
8268892-8269052,8269553-8269884,8270947-8271265,
8271335-8271420,8271600-8271684
Length = 515
Score = 27.9 bits (59), Expect = 4.2
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = -3
Query: 303 SVRVFSRLRKNAHFQSLRGTL 241
SV +F L KN+H +SLRGT+
Sbjct: 88 SVELFPTLAKNSHDRSLRGTV 108
>04_04_1586 - 34621945-34623366
Length = 473
Score = 27.5 bits (58), Expect = 5.5
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = -1
Query: 329 PVSKVHDTCPSVYFHVCVRTPTFSHFVERYVQFTLHTFQLLLVISSA 189
P + DTC + + VR PT S + ++ TL LL+ + A
Sbjct: 385 PAVSLLDTCYDLSGYASVRVPTVSFYFDQGAVLTLPARNLLVEVGGA 431
>05_07_0260 -
28739035-28739085,28739316-28739596,28740545-28740572,
28740653-28740749,28741216-28741272,28741353-28741415,
28741533-28741621,28741779-28741865,28742041-28742162,
28742245-28742500,28742595-28742744,28743120-28743278,
28743820-28743892,28743968-28744024,28744115-28744243,
28744469-28744560,28745220-28745252
Length = 607
Score = 27.1 bits (57), Expect = 7.3
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -1
Query: 296 VYFHVCVRTPTFSHFVERYVQFTLHTFQLLLVISSA 189
VYF++C RT F + Y + +LL+I+SA
Sbjct: 112 VYFYICDRTNIFPETKKSYNRDLFLFLYILLIIASA 147
>01_05_0788 +
25223373-25223405,25224285-25224373,25224496-25224624,
25224710-25224766,25224844-25224916,25225509-25225667,
25226755-25226904,25227013-25227268,25227358-25227479,
25227531-25227599,25227653-25227739,25227842-25227930,
25228168-25228224,25229162-25229258,25229348-25229506
Length = 541
Score = 27.1 bits (57), Expect = 7.3
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -1
Query: 296 VYFHVCVRTPTFSHFVERYVQFTLHTFQLLLVISSA 189
VYF++C RT F + Y + +LL+I+SA
Sbjct: 111 VYFYICDRTNIFPESKKSYNRDLFLFLYILLIIASA 146
>01_05_0357 - 21344146-21344575,21344629-21345455,21345782-21345784
Length = 419
Score = 27.1 bits (57), Expect = 7.3
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +3
Query: 396 WHREREALRNGFGGSIDWSA 455
WHR R ALR + GS WSA
Sbjct: 376 WHRNRAALRRDYFGS-PWSA 394
>11_06_0210 +
21296782-21296909,21297135-21298844,21299127-21299418,
21300210-21300519,21300890-21301110
Length = 886
Score = 26.6 bits (56), Expect = 9.6
Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 4/78 (5%)
Frame = +3
Query: 204 KQQLKRMQGKLNVTFH----EVTESGRSYADVKIHGRTSIVNLRYGTSAEREKQRLLHHA 371
KQQ M G + + + EV+ S + +DV + T + L S R+KQ LH
Sbjct: 330 KQQRSTMAGNASFSLYCLLSEVSMSINATSDVTV---TFLEKLVDSASDSRQKQLALHQL 386
Query: 372 RATAIRKAWHREREALRN 425
T + + + E E L N
Sbjct: 387 ACTRLLRKDYAEAERLFN 404
>10_08_0403 -
17635530-17635578,17635737-17635820,17636110-17636219,
17637507-17637638,17638497-17638576,17638877-17639008,
17639534-17639648,17640244-17640286,17640359-17640493,
17641347-17641414,17641473-17641478
Length = 317
Score = 26.6 bits (56), Expect = 9.6
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = -1
Query: 338 CAGPVSKVHDTCPSVYF 288
C G +SK H TC SV+F
Sbjct: 42 CRGDLSKAHRTCISVWF 58
>10_05_0017 + 8037822-8038211
Length = 129
Score = 26.6 bits (56), Expect = 9.6
Identities = 11/39 (28%), Positives = 18/39 (46%)
Frame = +3
Query: 327 GTSAEREKQRLLHHARATAIRKAWHREREALRNGFGGSI 443
G + +R HH + K HR ++ R GFG ++
Sbjct: 85 GHAVRVNAKRSRHHLNKEGLEKISHRGKQRQRQGFGTAV 123
>05_04_0035 + 17378541-17381276
Length = 911
Score = 26.6 bits (56), Expect = 9.6
Identities = 20/74 (27%), Positives = 32/74 (43%)
Frame = +3
Query: 81 RDVYTSVFNRSHLLPFSFVVHGDQQDVFYFVKEDTWRAADDKQQLKRMQGKLNVTFHEVT 260
+ V V+ ++L+ F V + YF K R K + G N F +T
Sbjct: 429 KSVLPDVYTYTYLVDSCFKVGRVDDTIQYFYKMADGREHGPKFNI----GFFNRMFEGLT 484
Query: 261 ESGRSYADVKIHGR 302
E+GR +K++GR
Sbjct: 485 EAGRMDDALKVYGR 498
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,559,852
Number of Sequences: 37544
Number of extensions: 244704
Number of successful extensions: 736
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 727
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 736
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 907440304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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