Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_D24
         (458 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_29770| Best HMM Match : ig (HMM E-Value=3.4e-05)                    32   0.26 
SB_55607| Best HMM Match : ig (HMM E-Value=4.6e-17)                    31   0.61 
SB_22285| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.4  
SB_26174| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.2  
SB_51175| Best HMM Match : p450 (HMM E-Value=0)                        28   4.3  
SB_41424| Best HMM Match : TBCC (HMM E-Value=0.57)                     28   4.3  
SB_53604| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.3  
SB_37498| Best HMM Match : MATH (HMM E-Value=1.8e-28)                  28   4.3  
SB_27454| Best HMM Match : Lipase_GDSL (HMM E-Value=0.091)             27   5.6  
SB_53557| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.5  
SB_30168| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.5  
SB_48643| Best HMM Match : DUF663 (HMM E-Value=0)                      27   9.9  
SB_31634| Best HMM Match : Peptidase_M2 (HMM E-Value=0)                27   9.9  
SB_2001| Best HMM Match : SBBP (HMM E-Value=4.8)                       27   9.9  
SB_32466| Best HMM Match : Enterotoxin_ST (HMM E-Value=2.7)            27   9.9  
SB_32247| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  
SB_17710| Best HMM Match : Peptidase_M2 (HMM E-Value=8.8e-06)          27   9.9  

>SB_29770| Best HMM Match : ig (HMM E-Value=3.4e-05)
          Length = 454

 Score = 31.9 bits (69), Expect = 0.26
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = -1

Query: 371 SVMQKPLFLTFCAGPVSKVHDTCPSVYFHVCVRTPTFSHFVERYV 237
           ++++ PLF TF        H +CPS+Y+      P+   FV  Y+
Sbjct: 93  NILRAPLFTTFATLRPPLQHSSCPSIYYLRYSTPPSTIFFVSLYL 137



 Score = 31.1 bits (67), Expect = 0.46
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = -1

Query: 371 SVMQKPLFLTFCAGPVSKVHDTCPSVYFHVCVRTPTFSHFVERYV 237
           ++++ PLF TF        H +CPS+Y+      P+   FV  Y+
Sbjct: 148 NILRVPLFTTFATLRHPLQHSSCPSIYYLRYSTPPSTIFFVSLYL 192


>SB_55607| Best HMM Match : ig (HMM E-Value=4.6e-17)
          Length = 274

 Score = 30.7 bits (66), Expect = 0.61
 Identities = 26/105 (24%), Positives = 48/105 (45%), Gaps = 11/105 (10%)
 Frame = -1

Query: 458 SSRP-IDGTTEPIAQCFAFAMPGFPNSGSTSVM-----QKPLFLTFC-----AGPVSKVH 312
           S +P ++ +++P+ QC + +     N GST+++      K     +C     +   SK H
Sbjct: 32  SPKPTVEWSSQPLPQCRSLSRAKIVNQGSTAILTIESVTKEDEGIYCCVARNSNGQSKPH 91

Query: 311 DTCPSVYFHVCVRTPTFSHFVERYVQFTLHTFQLLLVISSAPRVF 177
               SV +H  +  P  S F +  V  T  T  L+  + +AP+ +
Sbjct: 92  IVILSVSYHKRILPPHVSPFSQVVVSTTDSTTTLICAVENAPQKY 136


>SB_22285| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 120

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 18/48 (37%), Positives = 24/48 (50%)
 Frame = -2

Query: 271 RPLSVTSWNVTFNLPCIRFSCCLSSAARHVSSLTK*KTSCWSPWTTKE 128
           R L V   N++     I+  C   S  R    LTK  T+ WSP+T+KE
Sbjct: 20  RVLGVLQRNLSSCSRAIKEHCTYLSLVR---PLTKFNTTAWSPYTSKE 64


>SB_26174| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 885

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 5/88 (5%)
 Frame = -1

Query: 386 NSGSTSVMQKPLFLTFCA-GPVSKVHDTCPSVYFHVCVRTPTFSHF---VERYVQFTLHT 219
           +S +  VM   L  +F + G    +H      +  V + TP+ S+    V     FT+  
Sbjct: 271 DSQTYKVMGPSLISSFRSLGDAIALHMRKSGYHGDVAMVTPSLSNHRMAVVNLTAFTVQL 330

Query: 218 FQLLLVISSAPRVFFNEIKDVL-LVAMD 138
            Q L+ +  APRV  +++  VL LV++D
Sbjct: 331 IQALVPLEQAPRVMSSDLVTVLSLVSID 358


>SB_51175| Best HMM Match : p450 (HMM E-Value=0)
          Length = 408

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -1

Query: 431 EPIAQCFAFAMPGFPNSGST 372
           E +AQCF F + GF N+ +T
Sbjct: 213 EIVAQCFTFILAGFQNTSNT 232


>SB_41424| Best HMM Match : TBCC (HMM E-Value=0.57)
          Length = 285

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +3

Query: 237 NVTFHEVTESGRSYADVKIHGRTSIVNLRY 326
           N+TF    +S RS AD K+H     VNL+Y
Sbjct: 243 NITF--TFDSARSLADSKLHSFAVYVNLKY 270


>SB_53604| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 655

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 15/54 (27%), Positives = 27/54 (50%)
 Frame = +3

Query: 228 GKLNVTFHEVTESGRSYADVKIHGRTSIVNLRYGTSAEREKQRLLHHARATAIR 389
           G+L++ FH  T+S   +A  ++H +    +   GT     K+    +AR T I+
Sbjct: 199 GRLDLRFHSGTQSCTHHAHTQVHAKAHARSTHAGT----RKRTRTQYARTTEIK 248


>SB_37498| Best HMM Match : MATH (HMM E-Value=1.8e-28)
          Length = 562

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 18/47 (38%), Positives = 23/47 (48%)
 Frame = +3

Query: 150 QQDVFYFVKEDTWRAADDKQQLKRMQGKLNVTFHEVTESGRSYADVK 290
           QQ+  Y  +E     A   Q L+  QGKLNV    V E  R  A++K
Sbjct: 271 QQEQMYEQRE---ALAVANQNLRTYQGKLNVIERSVAEQRRELAELK 314


>SB_27454| Best HMM Match : Lipase_GDSL (HMM E-Value=0.091)
          Length = 522

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +3

Query: 264 SGRSYADVKIHGRTSIVNLRYGTSAEREKQ 353
           +GR++ADV ++G  S++    G  A  E Q
Sbjct: 16  NGRTWADVMVYGNISVITCLAGFQATAEPQ 45


>SB_53557| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1049

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 13/42 (30%), Positives = 18/42 (42%)
 Frame = -1

Query: 311 DTCPSVYFHVCVRTPTFSHFVERYVQFTLHTFQLLLVISSAP 186
           D  P   FH+   +P   +FV   +QF  H     LV  + P
Sbjct: 819 DFDPGAKFHIVSNSPYIGYFVSLILQFQFHRALCNLVKHTGP 860


>SB_30168| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6863

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
 Frame = +3

Query: 228  GKLNVTFHEVTESGRSYADVKIH-GRTSIVNLRYGTSAEREKQRL--LHHARATAIRKAW 398
            G  +   H   ES     +  I  G+  +V L  G   E  ++ +  LH A +T +RKA 
Sbjct: 3547 GAADRNVHAEVESEHDRLEAFIEEGKALVVGLDEGPQREELQKEVDKLHEAWSTLVRKAR 3606

Query: 399  HREREALRNG 428
             + R+  R G
Sbjct: 3607 GKRRKLQRRG 3616


>SB_48643| Best HMM Match : DUF663 (HMM E-Value=0)
          Length = 450

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = -1

Query: 395 GFPNSGSTSVMQKPLFLTFCAG-PVSKV 315
           G P S   SV   P FL FC+G PV+ +
Sbjct: 32  GLPVSSLCSVRDNPEFLVFCSGLPVTSL 59


>SB_31634| Best HMM Match : Peptidase_M2 (HMM E-Value=0)
          Length = 663

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
 Frame = -1

Query: 329 PVSKVHDTC-PSVYFHVCVRTPTFSHFVERYVQFTLH 222
           P+S+   T  P   FH+        +F+ R +QF LH
Sbjct: 484 PISRDETTFDPGSKFHIAANARYIQYFLSRILQFQLH 520


>SB_2001| Best HMM Match : SBBP (HMM E-Value=4.8)
          Length = 169

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 17/62 (27%), Positives = 30/62 (48%)
 Frame = +3

Query: 30  SRGRAVVTAVPSANAIYRDVYTSVFNRSHLLPFSFVVHGDQQDVFYFVKEDTWRAADDKQ 209
           ++GR V     + + I     +S+  RSHL P + +   DQ  + Y + E+    +DD Q
Sbjct: 91  TQGRIVAADTRNRSYIIETSNSSLLKRSHLRPLAGI---DQDTIPYELPEEEDVKSDDTQ 147

Query: 210 QL 215
            +
Sbjct: 148 DV 149


>SB_32466| Best HMM Match : Enterotoxin_ST (HMM E-Value=2.7)
          Length = 86

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 16/71 (22%), Positives = 34/71 (47%), Gaps = 8/71 (11%)
 Frame = -3

Query: 375 HERDAKAAVSHVLRWSRI*GSRYLSVRVFSRLRKNAHFQSLRGTLR--------SIYPAY 220
           HER ++ + + +    R+  + + +    SR+  N+H   LR ++R        S    +
Sbjct: 3   HERQSRNSTACICASQRVMNNSHATRLRASRVMNNSHATRLRASVRHTHRLTQSSCVTVH 62

Query: 219 VSAVACHQQRA 187
           +   ACH+Q++
Sbjct: 63  LCVTACHEQQS 73


>SB_32247| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2209

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +3

Query: 384 IRKAWHREREALRNGFGGSIDW 449
           +R  W+R R +LR+G+    DW
Sbjct: 630 LRSDWNRSRFSLRSGYSSLRDW 651


>SB_17710| Best HMM Match : Peptidase_M2 (HMM E-Value=8.8e-06)
          Length = 179

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
 Frame = -1

Query: 329 PVSKVHDTC-PSVYFHVCVRTPTFSHFVERYVQFTLH 222
           P+S+   T  P   FH+        +F+ R +QF LH
Sbjct: 114 PISRDETTFDPGSKFHIAANARYIQYFLSRILQFQLH 150


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,371,874
Number of Sequences: 59808
Number of extensions: 282844
Number of successful extensions: 749
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 702
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 748
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 932979724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)