Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_D24
         (458 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF040643-4|AAB94965.1|  110|Caenorhabditis elegans Hypothetical ...    29   1.2  
Z81515-9|CAH04722.1| 2266|Caenorhabditis elegans Hypothetical pr...    28   2.8  
Z81515-3|CAC42289.2| 1693|Caenorhabditis elegans Hypothetical pr...    28   2.8  
Z81515-2|CAB04197.2| 1691|Caenorhabditis elegans Hypothetical pr...    28   2.8  
AC006708-10|AAF60430.2| 1250|Caenorhabditis elegans Hypothetical...    28   2.8  
Z68215-3|CAA92452.3|  415|Caenorhabditis elegans Hypothetical pr...    27   5.0  
U40933-5|AAA81675.1| 1116|Caenorhabditis elegans Hypothetical pr...    27   5.0  
AC084161-3|AAK29731.2|  249|Caenorhabditis elegans Hypothetical ...    27   8.7  

>AF040643-4|AAB94965.1|  110|Caenorhabditis elegans Hypothetical
           protein F14D2.11 protein.
          Length = 110

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 11/32 (34%), Positives = 22/32 (68%)
 Frame = +3

Query: 285 VKIHGRTSIVNLRYGTSAEREKQRLLHHARAT 380
           V+++G+T  +N+    + E+ K +L H+AR+T
Sbjct: 47  VRLNGKTRTLNVNASDTVEQGKMQLCHNARST 78


>Z81515-9|CAH04722.1| 2266|Caenorhabditis elegans Hypothetical protein
            F26H11.2c protein.
          Length = 2266

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 16/51 (31%), Positives = 27/51 (52%)
 Frame = +3

Query: 246  FHEVTESGRSYADVKIHGRTSIVNLRYGTSAEREKQRLLHHARATAIRKAW 398
            + E  E   S+   +  G +S  + R  ++ ++  QR L + RATAIR+ W
Sbjct: 1155 YDEPEEEDESWLS-RNRGGSSEFSHRSSSARKKRPQRSLDNRRATAIRREW 1204


>Z81515-3|CAC42289.2| 1693|Caenorhabditis elegans Hypothetical protein
            F26H11.2b protein.
          Length = 1693

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 16/51 (31%), Positives = 27/51 (52%)
 Frame = +3

Query: 246  FHEVTESGRSYADVKIHGRTSIVNLRYGTSAEREKQRLLHHARATAIRKAW 398
            + E  E   S+   +  G +S  + R  ++ ++  QR L + RATAIR+ W
Sbjct: 1155 YDEPEEEDESWLS-RNRGGSSEFSHRSSSARKKRPQRSLDNRRATAIRREW 1204


>Z81515-2|CAB04197.2| 1691|Caenorhabditis elegans Hypothetical protein
            F26H11.2a protein.
          Length = 1691

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 16/51 (31%), Positives = 27/51 (52%)
 Frame = +3

Query: 246  FHEVTESGRSYADVKIHGRTSIVNLRYGTSAEREKQRLLHHARATAIRKAW 398
            + E  E   S+   +  G +S  + R  ++ ++  QR L + RATAIR+ W
Sbjct: 1155 YDEPEEEDESWLS-RNRGGSSEFSHRSSSARKKRPQRSLDNRRATAIRREW 1204


>AC006708-10|AAF60430.2| 1250|Caenorhabditis elegans Hypothetical
           protein Y110A7A.16 protein.
          Length = 1250

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +3

Query: 300 RTSIVNLRYGTSAEREKQRLLHHARATAIRKAWHRE 407
           R S   L+ G   E+EK+++  H+R T++   W  E
Sbjct: 164 RGSAGKLKPGEKIEKEKEQIEQHSRKTSVHWRWDGE 199


>Z68215-3|CAA92452.3|  415|Caenorhabditis elegans Hypothetical
           protein C53B4.3 protein.
          Length = 415

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +1

Query: 364 ITLVLPLLGKPGIANAKHCAMGSVVPSIGLL 456
           IT V+ +L KPG+AN      G VVP I ++
Sbjct: 215 ITNVVRILQKPGVANVMIKKNGGVVPFIMII 245


>U40933-5|AAA81675.1| 1116|Caenorhabditis elegans Hypothetical
           protein F20D12.2 protein.
          Length = 1116

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 19/58 (32%), Positives = 29/58 (50%)
 Frame = +3

Query: 255 VTESGRSYADVKIHGRTSIVNLRYGTSAEREKQRLLHHARATAIRKAWHREREALRNG 428
           +T    S   +K  G T + NLR G  A R +QR++  A A ++   + R RE   +G
Sbjct: 68  LTVPSTSSFPLKGSGDTKVPNLREGEFAIRPRQRMIPPAGANSL---FRRPREGTPDG 122


>AC084161-3|AAK29731.2|  249|Caenorhabditis elegans Hypothetical
           protein Y92H12A.3 protein.
          Length = 249

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +3

Query: 282 DVKIHGRT-SIVNLRYGTSAEREKQRLLHHAR 374
           D K H  + ++   R GTSAER++ + +HH +
Sbjct: 196 DTKEHSSSRTLRGNRQGTSAERQQMQQMHHQK 227


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,321,117
Number of Sequences: 27780
Number of extensions: 203341
Number of successful extensions: 553
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 543
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 553
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 820565746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)