Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_D24
         (458 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g32090.2 68415.m03923 lactoylglutathione lyase family protein...    29   2.0  
At2g32090.1 68415.m03922 lactoylglutathione lyase family protein...    29   2.0  
At4g25880.2 68417.m03722 pumilio/Puf RNA-binding domain-containi...    28   2.6  
At4g25880.1 68417.m03721 pumilio/Puf RNA-binding domain-containi...    28   2.6  
At5g05210.1 68418.m00555 nucleolar matrix protein-related contai...    28   3.5  
At5g15300.1 68418.m01792 pentatricopeptide (PPR) repeat-containi...    27   4.6  
At4g14365.1 68417.m02213 zinc finger (C3HC4-type RING finger) fa...    27   4.6  
At3g49500.1 68416.m05410 RNA-dependent RNA polymerase (SDE1) ide...    27   4.6  
At1g70260.1 68414.m08083 nodulin MtN21 family protein contains s...    27   4.6  
At1g51710.1 68414.m05827 ubiquitin-specific protease 6, putative...    27   4.6  
At1g60050.1 68414.m06765 nodulin-related low similarity to MtN21...    27   6.1  

>At2g32090.2 68415.m03923 lactoylglutathione lyase family protein /
           glyoxalase I family protein contains glyoxalase family
           protein domain, Pfam:PF00903
          Length = 113

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 21/79 (26%), Positives = 32/79 (40%)
 Frame = -1

Query: 410 AFAMPGFPNSGSTSVMQKPLFLTFCAGPVSKVHDTCPSVYFHVCVRTPTFSHFVERYVQF 231
           AFAM     + ST++ + P   T      S +      +  H+C   P F  F+    + 
Sbjct: 26  AFAMHIIQRNPSTNLPEGPYSATSAVKDPSHL-----PMGHHICFSVPNFDSFLHSLKEK 80

Query: 230 TLHTFQLLLVISSAPRVFF 174
            + TFQ  L      +VFF
Sbjct: 81  GIETFQKSLPDGKVKQVFF 99


>At2g32090.1 68415.m03922 lactoylglutathione lyase family protein /
           glyoxalase I family protein contains glyoxalase family
           protein domain, Pfam:PF00903
          Length = 135

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 21/79 (26%), Positives = 32/79 (40%)
 Frame = -1

Query: 410 AFAMPGFPNSGSTSVMQKPLFLTFCAGPVSKVHDTCPSVYFHVCVRTPTFSHFVERYVQF 231
           AFAM     + ST++ + P   T      S +      +  H+C   P F  F+    + 
Sbjct: 48  AFAMHIIQRNPSTNLPEGPYSATSAVKDPSHL-----PMGHHICFSVPNFDSFLHSLKEK 102

Query: 230 TLHTFQLLLVISSAPRVFF 174
            + TFQ  L      +VFF
Sbjct: 103 GIETFQKSLPDGKVKQVFF 121


>At4g25880.2 68417.m03722 pumilio/Puf RNA-binding domain-containing
           protein contains Pfam profile:PF00806 Pumilio-family RNA
           binding domains
          Length = 852

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -1

Query: 401 MPGFPNSGSTSVMQKPLFLTFCAGP 327
           MPG+P+ GS  V+  P F+   +GP
Sbjct: 355 MPGYPSHGSVPVVVSPDFIPQLSGP 379


>At4g25880.1 68417.m03721 pumilio/Puf RNA-binding domain-containing
           protein contains Pfam profile:PF00806 Pumilio-family RNA
           binding domains
          Length = 861

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -1

Query: 401 MPGFPNSGSTSVMQKPLFLTFCAGP 327
           MPG+P+ GS  V+  P F+   +GP
Sbjct: 355 MPGYPSHGSVPVVVSPDFIPQLSGP 379


>At5g05210.1 68418.m00555 nucleolar matrix protein-related contains
           Pfam domain, PF04935: Surfeit locus protein 6
          Length = 386

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 24/87 (27%), Positives = 33/87 (37%), Gaps = 3/87 (3%)
 Frame = +3

Query: 189 RAADDKQQLKRMQGKLNVTFHEVTESGRSYADVKIHGRTSIVNLRYGTSAEREKQRLLHH 368
           R A  KQ+LK+    L     E  +SG    D      T    L    S E         
Sbjct: 101 RLASQKQKLKKKHADLREQKLEQEKSGTELPDDDSKKETDNNRLNDDDSKEETDNNRQKD 160

Query: 369 ARATA---IRKAWHREREALRNGFGGS 440
            R+     +R+  HR+ + L+ G GGS
Sbjct: 161 DRSVTYEELRERLHRKIDELKGGRGGS 187


>At5g15300.1 68418.m01792 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 548

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +1

Query: 22  HVILEDAQSSQPSLQLTLFTEMYIHPFSTDLISYRF 129
           HV+   AQS +P   ++L+TEM     S D  ++ F
Sbjct: 82  HVLRGSAQSMKPEKTVSLYTEMEKRGVSPDRYTFTF 117


>At4g14365.1 68417.m02213 zinc finger (C3HC4-type RING finger)
           family protein / ankyrin repeat family protein contains
           Pfam profile: PF00097 zinc finger, C3HC4 type (RING
           finger) and Pfam profile: PF00023 ankyrin repeat
          Length = 376

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
 Frame = -1

Query: 227 LHTFQLLLVISSAPRVFFNEIKDVLLVAMDDEGKR*EMRSVENG-CIY 87
           +HT +LLL   + P V  +++K  L VA  DEG    +R++E+  C++
Sbjct: 91  VHTVKLLLSHGANPLVLDDDVKTALEVAR-DEGYSNVVRAIESHICLF 137


>At3g49500.1 68416.m05410 RNA-dependent RNA polymerase (SDE1)
           identical to RNA-dependent RNA polymerase [Arabidopsis
           thaliana] gi|8248473|gb|AAF74208
          Length = 1196

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -1

Query: 230 TLHTFQLLLVISSAPRVFFNEIKD 159
           TLH F L+L ++S+PRV++    D
Sbjct: 210 TLHGFVLILQLASSPRVWYRTADD 233


>At1g70260.1 68414.m08083 nodulin MtN21 family protein contains
           similarity to MtN21 [Medicago truncatula] GI:2598575;
           contains Pfam profile PF00892: Integral membrane protein
          Length = 375

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +3

Query: 87  VYTSVFNRSHLLPFSFVVHGDQQ 155
           VYT+ F    LLPFSF+ H +++
Sbjct: 45  VYTNAFGSILLLPFSFLFHRNER 67


>At1g51710.1 68414.m05827 ubiquitin-specific protease 6, putative
           (UBP6) similar to GI:11993465
          Length = 482

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 10/74 (13%)
 Frame = +3

Query: 156 DVFYFVKEDTWRAAD-DKQQLKRMQGKLNVTFHEVTESGRSYADVKI---------HGRT 305
           D+F    ED  +  +  +Q+L+  +GK  +      +SG   +DVK+          G +
Sbjct: 334 DIFDLCSEDLRKKLEAPRQKLREEEGK-KLGLQTSAKSGSKDSDVKMTDAEASANGSGES 392

Query: 306 SIVNLRYGTSAERE 347
           S VN + GTS+E+E
Sbjct: 393 STVNPQEGTSSEKE 406


>At1g60050.1 68414.m06765 nodulin-related low similarity to MtN21
           [Medicago truncatula] GI:2598575; contains Pfam profile
           PF00892: Integral membrane protein
          Length = 374

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +3

Query: 87  VYTSVFNRSHLLPFSFVVHGDQQD 158
           VYT+      LLP+SF  H D+ D
Sbjct: 46  VYTNALGSLLLLPYSFYFHRDESD 69


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,761,744
Number of Sequences: 28952
Number of extensions: 189244
Number of successful extensions: 542
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 532
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 542
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 762235320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)