Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_D23
(418 letters)
Database: tribolium
336 sequences; 122,585 total letters
Searching.......................................................done
Score E
Sequences producing significant alignments: (bits) Value
EU019713-1|ABU25225.1| 528|Tribolium castaneum chitin deacetyla... 21 6.4
EU019712-1|ABU25224.1| 535|Tribolium castaneum chitin deacetyla... 21 6.4
AF225975-2|AAF74116.1| 302|Tribolium castaneum Tc-tailless prot... 21 6.4
AF219117-1|AAF71999.1| 406|Tribolium castaneum tailless ortholo... 21 6.4
AY055847-1|AAL23667.2| 312|Tribolium castaneum cephalothorax pr... 20 8.4
AY055846-1|AAL26542.2| 312|Tribolium castaneum cephalothorax pr... 20 8.4
AY055845-1|AAL23670.2| 230|Tribolium castaneum cephalothorax pr... 20 8.4
AF426396-1|AAL27023.2| 312|Tribolium castaneum cephalothorax pr... 20 8.4
AF426395-1|AAL27022.2| 297|Tribolium castaneum cephalothorax pr... 20 8.4
AF321227-2|AAK16422.1| 312|Tribolium castaneum Scr protein. 20 8.4
AF261823-1|AAG13010.1| 157|Tribolium castaneum cephalothorax pr... 20 8.4
AF227628-1|AAF42868.1| 312|Tribolium castaneum sex combs reduce... 20 8.4
>EU019713-1|ABU25225.1| 528|Tribolium castaneum chitin deacetylase
2B protein.
Length = 528
Score = 20.6 bits (41), Expect = 6.4
Identities = 6/14 (42%), Positives = 9/14 (64%)
Frame = -1
Query: 121 FSCLFLPGPFPWNL 80
F+C+ P +PW L
Sbjct: 504 FTCMECPNNYPWIL 517
>EU019712-1|ABU25224.1| 535|Tribolium castaneum chitin deacetylase
2A protein.
Length = 535
Score = 20.6 bits (41), Expect = 6.4
Identities = 6/14 (42%), Positives = 9/14 (64%)
Frame = -1
Query: 121 FSCLFLPGPFPWNL 80
F+C+ P +PW L
Sbjct: 511 FTCMECPNNYPWIL 524
>AF225975-2|AAF74116.1| 302|Tribolium castaneum Tc-tailless
protein.
Length = 302
Score = 20.6 bits (41), Expect = 6.4
Identities = 9/28 (32%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Frame = -1
Query: 187 PSGV--SVELIFFINPSWTAFLIRFSCL 110
PS + S + F+N W + F+CL
Sbjct: 196 PSAICESAAQLLFMNVQWVRSIPAFTCL 223
>AF219117-1|AAF71999.1| 406|Tribolium castaneum tailless ortholog
protein.
Length = 406
Score = 20.6 bits (41), Expect = 6.4
Identities = 9/28 (32%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Frame = -1
Query: 187 PSGV--SVELIFFINPSWTAFLIRFSCL 110
PS + S + F+N W + F+CL
Sbjct: 196 PSAICESAAQLIFMNVQWVRSIPAFTCL 223
>AY055847-1|AAL23667.2| 312|Tribolium castaneum cephalothorax
protein.
Length = 312
Score = 20.2 bits (40), Expect = 8.4
Identities = 8/23 (34%), Positives = 11/23 (47%)
Frame = +3
Query: 48 PPKEAFRYLSHKFHGKGPGKNKQ 116
PP+ A +Y H + PG Q
Sbjct: 45 PPQVAPQYPQHPYAAPAPGHGLQ 67
>AY055846-1|AAL26542.2| 312|Tribolium castaneum cephalothorax
protein.
Length = 312
Score = 20.2 bits (40), Expect = 8.4
Identities = 8/23 (34%), Positives = 11/23 (47%)
Frame = +3
Query: 48 PPKEAFRYLSHKFHGKGPGKNKQ 116
PP+ A +Y H + PG Q
Sbjct: 45 PPQVAPQYPQHPYAAPAPGHGLQ 67
>AY055845-1|AAL23670.2| 230|Tribolium castaneum cephalothorax
protein.
Length = 230
Score = 20.2 bits (40), Expect = 8.4
Identities = 8/23 (34%), Positives = 11/23 (47%)
Frame = +3
Query: 48 PPKEAFRYLSHKFHGKGPGKNKQ 116
PP+ A +Y H + PG Q
Sbjct: 45 PPQVAPQYPQHPYAAPAPGHGLQ 67
>AF426396-1|AAL27023.2| 312|Tribolium castaneum cephalothorax
protein.
Length = 312
Score = 20.2 bits (40), Expect = 8.4
Identities = 8/23 (34%), Positives = 11/23 (47%)
Frame = +3
Query: 48 PPKEAFRYLSHKFHGKGPGKNKQ 116
PP+ A +Y H + PG Q
Sbjct: 45 PPQVAPQYPQHPYAAPAPGHGLQ 67
>AF426395-1|AAL27022.2| 297|Tribolium castaneum cephalothorax
protein.
Length = 297
Score = 20.2 bits (40), Expect = 8.4
Identities = 8/23 (34%), Positives = 11/23 (47%)
Frame = +3
Query: 48 PPKEAFRYLSHKFHGKGPGKNKQ 116
PP+ A +Y H + PG Q
Sbjct: 45 PPQVAPQYPQHPYAAPAPGHGLQ 67
>AF321227-2|AAK16422.1| 312|Tribolium castaneum Scr protein.
Length = 312
Score = 20.2 bits (40), Expect = 8.4
Identities = 8/23 (34%), Positives = 11/23 (47%)
Frame = +3
Query: 48 PPKEAFRYLSHKFHGKGPGKNKQ 116
PP+ A +Y H + PG Q
Sbjct: 45 PPQVAPQYPQHPYAAPAPGHGLQ 67
>AF261823-1|AAG13010.1| 157|Tribolium castaneum cephalothorax
protein.
Length = 157
Score = 20.2 bits (40), Expect = 8.4
Identities = 8/23 (34%), Positives = 11/23 (47%)
Frame = +3
Query: 48 PPKEAFRYLSHKFHGKGPGKNKQ 116
PP+ A +Y H + PG Q
Sbjct: 45 PPQVAPQYPQHPYAAPAPGHGLQ 67
>AF227628-1|AAF42868.1| 312|Tribolium castaneum sex combs reduced
Scr protein.
Length = 312
Score = 20.2 bits (40), Expect = 8.4
Identities = 8/23 (34%), Positives = 11/23 (47%)
Frame = +3
Query: 48 PPKEAFRYLSHKFHGKGPGKNKQ 116
PP+ A +Y H + PG Q
Sbjct: 45 PPQVAPQYPQHPYAAPAPGHGLQ 67
Database: tribolium
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 122,585
Number of sequences in database: 336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 77,000
Number of Sequences: 336
Number of extensions: 1574
Number of successful extensions: 12
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used: 9174063
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)
- SilkBase 1999-2023 -