Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_D23
         (418 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66 |...    58   4e-10
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|...    26   2.0  
SPAC17H9.06c |||conserved fungal protein|Schizosaccharomyces pom...    25   3.6  
SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein Pof11|Schizos...    25   6.2  
SPCC1450.08c |wtf16||wtf element Wtf16|Schizosaccharomyces pombe...    24   8.2  

>SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 649

 Score = 58.4 bits (135), Expect = 4e-10
 Identities = 25/48 (52%), Positives = 38/48 (79%), Gaps = 1/48 (2%)
 Frame = +3

Query: 6   RIKLEYVDDEGRPLPPKEAFRYL-SHKFHGKGPGKNKQEKRIKKAVQE 146
           ++ ++YVD+ G  L PKEA++YL SH+FHGKG GK K EKR+++ V++
Sbjct: 593 QVDIKYVDEFGVELGPKEAYKYLLSHQFHGKGSGKAKTEKRLRRIVEK 640


>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
           Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1328

 Score = 26.2 bits (55), Expect = 2.0
 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = +3

Query: 6   RIKLEYVDDEGRPLP-PKEAFRYLSHKFHGKGPGKNKQE 119
           ++ +  +DD     P  KE    L HKFH KG  KN+ E
Sbjct: 488 KVLMPSLDDPMLSYPWSKEVLGCLKHKFHLKGFRKNQLE 526


>SPAC17H9.06c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 601

 Score = 25.4 bits (53), Expect = 3.6
 Identities = 13/52 (25%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
 Frame = -1

Query: 298 ID*NIVCS*LFGSRFAPL----STMKGE*VSLCFSCSICSVPSGVSVELIFF 155
           +D NI+ S ++ S F  L      MK   +   + C  C++ + +S ++++F
Sbjct: 439 VDSNIISS-IWQSEFIKLIKTVPNMKSAKIDATYGCDACNIHTRMSTQIVYF 489


>SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein
           Pof11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 506

 Score = 24.6 bits (51), Expect = 6.2
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +1

Query: 274 NYIQYSNQSYILFIKRLHVTXXXXXXTHVIVSHLTTYSSM 393
           NYI  S++ +   + RL  T       HV+  HL + +S+
Sbjct: 314 NYIISSSRDHTARVWRLDATSPAEACMHVLRGHLASVNSV 353


>SPCC1450.08c |wtf16||wtf element Wtf16|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 349

 Score = 24.2 bits (50), Expect = 8.2
 Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = -1

Query: 286 IVCS*LFGS-RFAPLSTMKGE*VSLCFSCSICSVPSGVSVELIFFINPSWT 137
           ++C  LFG  +F  L+  K         CS CS+ + + + L++   P WT
Sbjct: 162 VICFVLFGCIKFGNLNLDKA------LICSTCSISAALLLFLLYVRLPFWT 206


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,334,990
Number of Sequences: 5004
Number of extensions: 23598
Number of successful extensions: 75
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 146319408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)