Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_D23
(418 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_03_0387 - 18412064-18412144,18412280-18412361,18412922-184131... 91 3e-19
10_08_0499 + 18354014-18354106,18354219-18354424,18356499-18356751 31 0.37
03_05_0776 + 27625122-27625415,27627226-27627273,27627455-276275... 31 0.37
03_01_0081 + 645214-645228,645791-645856,645973-646142,646265-64... 31 0.37
06_03_0919 - 25939176-25940441 29 1.5
09_04_0728 - 19771975-19772093,19772131-19772224,19772322-197725... 29 2.0
02_01_0241 + 1595188-1595498,1596621-1596654,1596791-1596979,159... 28 2.6
11_01_0433 - 3323372-3324616,3324708-3324905 27 4.6
07_03_0537 - 19218461-19218982,19219482-19219868,19219993-192201... 27 6.0
06_02_0173 - 12601025-12601071,12601632-12601698,12601857-126019... 27 8.0
03_05_0649 - 26408926-26409099,26409668-26409799,26409921-26410199 27 8.0
01_06_1391 + 36992276-36992476,36992609-36992794,36993215-369933... 27 8.0
>02_03_0387 -
18412064-18412144,18412280-18412361,18412922-18413142,
18413387-18413745,18413834-18414443,18414546-18414605,
18414685-18414751,18414843-18414936,18415012-18415125,
18415242-18415308,18415386-18415551,18416587-18417080
Length = 804
Score = 91.1 bits (216), Expect = 3e-19
Identities = 43/81 (53%), Positives = 59/81 (72%)
Frame = +3
Query: 9 IKLEYVDDEGRPLPPKEAFRYLSHKFHGKGPGKNKQEKRIKKAVQEGLMKKMSSTDTPLG 188
I++E +D+ GR + PKEAFR LSHKFHGK PGK KQE+R KK E K+M S+DTPL
Sbjct: 666 IRIERIDEFGRVMTPKEAFRDLSHKFHGKAPGKMKQERRQKKYRDELKTKRMISSDTPLM 725
Query: 189 TLQMLQEKQRETHSPFIVLSG 251
+ + ++E Q + +P++VLSG
Sbjct: 726 SAEKMREAQALSKTPYLVLSG 746
>10_08_0499 + 18354014-18354106,18354219-18354424,18356499-18356751
Length = 183
Score = 31.1 bits (67), Expect = 0.37
Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = -1
Query: 220 SLCFSCSICSVPSGV-SVELIFFINPSWTAFLIRFSCL 110
S CF C P G + LI F++ SW FLI SCL
Sbjct: 74 SRCFCCGAALRPGGARACALILFLS-SWLTFLIAESCL 110
>03_05_0776 +
27625122-27625415,27627226-27627273,27627455-27627514,
27627633-27627802,27627901-27627973,27628096-27628161,
27628262-27628345,27628681-27628758,27629009-27629092,
27629835-27630137,27630227-27630397,27630971-27631161,
27631284-27631686,27632246-27632497,27632577-27633077,
27633181-27633278,27633400-27633499,27633722-27633867,
27633973-27634138
Length = 1095
Score = 31.1 bits (67), Expect = 0.37
Identities = 21/63 (33%), Positives = 34/63 (53%)
Frame = +3
Query: 54 KEAFRYLSHKFHGKGPGKNKQEKRIKKAVQEGLMKKMSSTDTPLGTLQMLQEKQRETHSP 233
KEA R L + GP K+++++R KKAV++ + DTP G + L + + +SP
Sbjct: 128 KEAAR-LQAQAASDGPKKSEKKQR-KKAVEDENPEDFIDPDTPHGQKKFLASQMAKQYSP 185
Query: 234 FIV 242
V
Sbjct: 186 TAV 188
>03_01_0081 +
645214-645228,645791-645856,645973-646142,646265-646319,
646434-646499,646604-646687,647091-647168,647425-647508,
648000-648302,648402-648572,649098-649288,649406-649808,
650368-650619,650696-651196,651306-651403,651810-651911,
652016-652178
Length = 933
Score = 31.1 bits (67), Expect = 0.37
Identities = 21/63 (33%), Positives = 34/63 (53%)
Frame = +3
Query: 54 KEAFRYLSHKFHGKGPGKNKQEKRIKKAVQEGLMKKMSSTDTPLGTLQMLQEKQRETHSP 233
KEA R L + GP K+++++R KKAV++ + DTP G + L + + +SP
Sbjct: 21 KEAAR-LQAQAASDGPKKSEKKQR-KKAVEDENPEDFIDPDTPHGQKKFLASQMAKQYSP 78
Query: 234 FIV 242
V
Sbjct: 79 AAV 81
>06_03_0919 - 25939176-25940441
Length = 421
Score = 29.1 bits (62), Expect = 1.5
Identities = 16/63 (25%), Positives = 26/63 (41%), Gaps = 4/63 (6%)
Frame = -1
Query: 253 APLSTMKGE*VSLCFSCSICSVPSGVSVELIFFINPSWTAFLIRFSCLFLPGP----FPW 86
A ++ + E L SC + P S + + P + A R+SC+ + P F W
Sbjct: 271 AGIAVLADELAELRVSCRCDTEPMATSDPAAYHLKPRFRALFTRYSCVRVRAPRLRVFEW 330
Query: 85 NLC 77
C
Sbjct: 331 RCC 333
>09_04_0728 -
19771975-19772093,19772131-19772224,19772322-19772507,
19772596-19772767,19772854-19772983,19773060-19773136,
19774109-19774194,19774508-19774585,19775916-19776045,
19776379-19776423,19776508-19776618,19776801-19777057,
19777153-19777302,19777899-19778008,19778426-19778546
Length = 621
Score = 28.7 bits (61), Expect = 2.0
Identities = 18/70 (25%), Positives = 31/70 (44%)
Frame = +3
Query: 18 EYVDDEGRPLPPKEAFRYLSHKFHGKGPGKNKQEKRIKKAVQEGLMKKMSSTDTPLGTLQ 197
+++ D+G L PKE YL+ + + +NK + V G+ K + LG +
Sbjct: 435 DHMWDDGNSLGPKEVHSYLTRVMYNR---RNKFDPLWNSLVIGGVKKGPKGEEKYLGMVN 491
Query: 198 MLQEKQRETH 227
M+ E H
Sbjct: 492 MIGTHFEENH 501
>02_01_0241 +
1595188-1595498,1596621-1596654,1596791-1596979,
1597956-1598045,1598136-1598201,1598680-1598892
Length = 300
Score = 28.3 bits (60), Expect = 2.6
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +3
Query: 297 IIYTVYKAVTRHTPPPSP 350
+IYT+ +AV H PPP P
Sbjct: 268 LIYTISQAVMHHLPPPLP 285
>11_01_0433 - 3323372-3324616,3324708-3324905
Length = 480
Score = 27.5 bits (58), Expect = 4.6
Identities = 12/33 (36%), Positives = 22/33 (66%)
Frame = -1
Query: 223 VSLCFSCSICSVPSGVSVELIFFINPSWTAFLI 125
++L +S S + SGV+ ++ + + SWTA+LI
Sbjct: 72 LTLPYSFSQLGMASGVAFQVFYGLMGSWTAYLI 104
>07_03_0537 -
19218461-19218982,19219482-19219868,19219993-19220154,
19220464-19221117,19221233-19221277,19223300-19223845,
19223930-19224307,19224642-19225313,19225373-19225456
Length = 1149
Score = 27.1 bits (57), Expect = 6.0
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = +1
Query: 259 ENQTINYIQYSNQSYILFI 315
EN TIN I YS ++Y+L++
Sbjct: 169 ENPTINEIAYSTRAYLLYL 187
>06_02_0173 -
12601025-12601071,12601632-12601698,12601857-12601934,
12602235-12602396,12603309-12603440,12604604-12604656,
12605808-12606372
Length = 367
Score = 26.6 bits (56), Expect = 8.0
Identities = 18/40 (45%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Frame = +3
Query: 39 RPLPPKEAFRYLSHKFHGKGPGK-NKQEKR--IKKAVQEG 149
R PP R L HK G+ PG NKQ++R KKA G
Sbjct: 151 RQAPPASG-RVLPHKKRGRPPGSGNKQQQRPQHKKAAAPG 189
>03_05_0649 - 26408926-26409099,26409668-26409799,26409921-26410199
Length = 194
Score = 26.6 bits (56), Expect = 8.0
Identities = 12/33 (36%), Positives = 13/33 (39%)
Frame = +3
Query: 42 PLPPKEAFRYLSHKFHGKGPGKNKQEKRIKKAV 140
P PP EA HG G G E IK +
Sbjct: 43 PAPPPEATSGSEQSIHGSGTGLQSSEAMIKAKI 75
>01_06_1391 +
36992276-36992476,36992609-36992794,36993215-36993327,
36993504-36993687,36993799-36993900
Length = 261
Score = 26.6 bits (56), Expect = 8.0
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = -1
Query: 223 VSLCFSCSICSVPSGVSVELIFFINPSWTAFLI 125
++L +S S + SGV ++L + SWTA+LI
Sbjct: 73 LTLPYSFSQLGMLSGVLLQLFYGFMGSWTAYLI 105
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,823,079
Number of Sequences: 37544
Number of extensions: 159898
Number of successful extensions: 594
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 584
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 594
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 754585524
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -