Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_D23
         (418 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55585| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.38 
SB_53740| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)             27   8.2  
SB_26603| Best HMM Match : SNF (HMM E-Value=0)                         27   8.2  

>SB_55585| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 41

 Score = 31.1 bits (67), Expect = 0.38
 Identities = 12/17 (70%), Positives = 15/17 (88%)
 Frame = +3

Query: 9  IKLEYVDDEGRPLPPKE 59
          +KLEYVD++GR L PKE
Sbjct: 25 VKLEYVDEKGRTLTPKE 41


>SB_53740| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)
          Length = 1980

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -1

Query: 79   CER*RKASLGGRGRPSSSTY 20
            C+R R A+LG  GRP+S+ Y
Sbjct: 965  CQRQRTAALGLTGRPNSARY 984


>SB_26603| Best HMM Match : SNF (HMM E-Value=0)
          Length = 518

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 11/15 (73%), Positives = 12/15 (80%)
 Frame = -1

Query: 136 AFLIRFSCLFLPGPF 92
           AFLI  SCLF+PG F
Sbjct: 467 AFLIGSSCLFIPGVF 481


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,101,521
Number of Sequences: 59808
Number of extensions: 179724
Number of successful extensions: 549
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 527
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 549
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 777158991
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)