Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_D23
(418 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U97005-9|AAK72085.1| 829|Caenorhabditis elegans Hypothetical pr... 87 5e-18
Z81515-3|CAC42289.2| 1693|Caenorhabditis elegans Hypothetical pr... 32 0.15
Z81515-8|CAB54234.3| 692|Caenorhabditis elegans Hypothetical pr... 30 0.59
Z81515-9|CAH04722.1| 2266|Caenorhabditis elegans Hypothetical pr... 30 0.78
Z81515-2|CAB04197.2| 1691|Caenorhabditis elegans Hypothetical pr... 30 0.78
AL117204-24|CAB55152.1| 298|Caenorhabditis elegans Hypothetical... 28 2.4
U23168-5|ABD63247.1| 2702|Caenorhabditis elegans Temporarily ass... 27 4.1
U23168-2|AAC38806.2| 1633|Caenorhabditis elegans Temporarily ass... 27 4.1
U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily ass... 27 4.1
Z70212-9|CAA94168.1| 491|Caenorhabditis elegans Hypothetical pr... 27 5.5
Z50742-6|CAA90619.1| 491|Caenorhabditis elegans Hypothetical pr... 27 5.5
U64862-5|AAQ91890.1| 2350|Caenorhabditis elegans Lin-5 (five) in... 27 5.5
U64862-4|AAZ32792.1| 2117|Caenorhabditis elegans Lin-5 (five) in... 27 5.5
U64862-3|AAM69078.1| 2396|Caenorhabditis elegans Lin-5 (five) in... 27 5.5
Z93383-1|CAB07622.1| 150|Caenorhabditis elegans Hypothetical pr... 27 7.2
Z83116-7|CAB05566.1| 150|Caenorhabditis elegans Hypothetical pr... 27 7.2
>U97005-9|AAK72085.1| 829|Caenorhabditis elegans Hypothetical
protein F19F10.9 protein.
Length = 829
Score = 87.0 bits (206), Expect = 5e-18
Identities = 38/82 (46%), Positives = 58/82 (70%)
Frame = +3
Query: 9 IKLEYVDDEGRPLPPKEAFRYLSHKFHGKGPGKNKQEKRIKKAVQEGLMKKMSSTDTPLG 188
+ + YVD +GR + K+A+R LS+KFHG+ PGK + EKR + +E M K +S DTPLG
Sbjct: 739 VNISYVDRKGREMDAKDAYRELSYKFHGRNPGKKQLEKRANRKDKEERMLKTNSYDTPLG 798
Query: 189 TLQMLQEKQRETHSPFIVLSGA 254
TL ++KQ++ +P++VLSG+
Sbjct: 799 TLDKQRKKQKQLSTPYLVLSGS 820
>Z81515-3|CAC42289.2| 1693|Caenorhabditis elegans Hypothetical protein
F26H11.2b protein.
Length = 1693
Score = 32.3 bits (70), Expect = 0.15
Identities = 23/74 (31%), Positives = 34/74 (45%)
Frame = +3
Query: 15 LEYVDDEGRPLPPKEAFRYLSHKFHGKGPGKNKQEKRIKKAVQEGLMKKMSSTDTPLGTL 194
+EY+DD+G P PP + RY+ + P N K+SS P G L
Sbjct: 1608 MEYMDDQGTP-PPGQQVRYVLQGGNSGTPNVNP--------------PKVSSRGGPRGGL 1652
Query: 195 QMLQEKQRETHSPF 236
M +Q++ H+PF
Sbjct: 1653 TMQMVQQQQQHNPF 1666
>Z81515-8|CAB54234.3| 692|Caenorhabditis elegans Hypothetical
protein F26H11.2d protein.
Length = 692
Score = 30.3 bits (65), Expect = 0.59
Identities = 22/75 (29%), Positives = 34/75 (45%)
Frame = +3
Query: 15 LEYVDDEGRPLPPKEAFRYLSHKFHGKGPGKNKQEKRIKKAVQEGLMKKMSSTDTPLGTL 194
+EY+DD+G P PP + RY+ + P N K+SS P G L
Sbjct: 150 MEYMDDQGTP-PPGQQVRYVLQGGNSGTPNVNP--------------PKVSSRGGPRGGL 194
Query: 195 QMLQEKQRETHSPFI 239
M +Q++ H+P +
Sbjct: 195 TMQMVQQQQQHNPVL 209
>Z81515-9|CAH04722.1| 2266|Caenorhabditis elegans Hypothetical protein
F26H11.2c protein.
Length = 2266
Score = 29.9 bits (64), Expect = 0.78
Identities = 22/73 (30%), Positives = 33/73 (45%)
Frame = +3
Query: 15 LEYVDDEGRPLPPKEAFRYLSHKFHGKGPGKNKQEKRIKKAVQEGLMKKMSSTDTPLGTL 194
+EY+DD+G P PP + RY+ + P N K+SS P G L
Sbjct: 1608 MEYMDDQGTP-PPGQQVRYVLQGGNSGTPNVNP--------------PKVSSRGGPRGGL 1652
Query: 195 QMLQEKQRETHSP 233
M +Q++ H+P
Sbjct: 1653 TMQMVQQQQQHNP 1665
>Z81515-2|CAB04197.2| 1691|Caenorhabditis elegans Hypothetical protein
F26H11.2a protein.
Length = 1691
Score = 29.9 bits (64), Expect = 0.78
Identities = 22/73 (30%), Positives = 33/73 (45%)
Frame = +3
Query: 15 LEYVDDEGRPLPPKEAFRYLSHKFHGKGPGKNKQEKRIKKAVQEGLMKKMSSTDTPLGTL 194
+EY+DD+G P PP + RY+ + P N K+SS P G L
Sbjct: 1608 MEYMDDQGTP-PPGQQVRYVLQGGNSGTPNVNP--------------PKVSSRGGPRGGL 1652
Query: 195 QMLQEKQRETHSP 233
M +Q++ H+P
Sbjct: 1653 TMQMVQQQQQHNP 1665
>AL117204-24|CAB55152.1| 298|Caenorhabditis elegans Hypothetical
protein Y116A8C.37 protein.
Length = 298
Score = 28.3 bits (60), Expect = 2.4
Identities = 11/39 (28%), Positives = 24/39 (61%)
Frame = +3
Query: 105 KNKQEKRIKKAVQEGLMKKMSSTDTPLGTLQMLQEKQRE 221
+N+Q +++KK + G + D+PLG L ++++R+
Sbjct: 14 RNRQARKVKKVEELGKVVDRKEMDSPLGRLYEEKKEERK 52
>U23168-5|ABD63247.1| 2702|Caenorhabditis elegans Temporarily assigned
gene nameprotein 308, isoform e protein.
Length = 2702
Score = 27.5 bits (58), Expect = 4.1
Identities = 20/61 (32%), Positives = 27/61 (44%)
Frame = +3
Query: 81 KFHGKGPGKNKQEKRIKKAVQEGLMKKMSSTDTPLGTLQMLQEKQRETHSPFIVLSGAKR 260
K KG + K+EKR+ A E K M + D LG L E + P I+ K+
Sbjct: 2356 KMREKGEERRKEEKRVSFAA-EVQEKTMEAIDKSLG-LDTSMEVEPAFQKPSIIKKPMKK 2413
Query: 261 E 263
E
Sbjct: 2414 E 2414
>U23168-2|AAC38806.2| 1633|Caenorhabditis elegans Temporarily assigned
gene nameprotein 308, isoform a protein.
Length = 1633
Score = 27.5 bits (58), Expect = 4.1
Identities = 20/61 (32%), Positives = 27/61 (44%)
Frame = +3
Query: 81 KFHGKGPGKNKQEKRIKKAVQEGLMKKMSSTDTPLGTLQMLQEKQRETHSPFIVLSGAKR 260
K KG + K+EKR+ A E K M + D LG L E + P I+ K+
Sbjct: 1287 KMREKGEERRKEEKRVSFAA-EVQEKTMEAIDKSLG-LDTSMEVEPAFQKPSIIKKPMKK 1344
Query: 261 E 263
E
Sbjct: 1345 E 1345
>U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily assigned
gene nameprotein 308, isoform c protein.
Length = 7548
Score = 27.5 bits (58), Expect = 4.1
Identities = 20/61 (32%), Positives = 27/61 (44%)
Frame = +3
Query: 81 KFHGKGPGKNKQEKRIKKAVQEGLMKKMSSTDTPLGTLQMLQEKQRETHSPFIVLSGAKR 260
K KG + K+EKR+ A E K M + D LG L E + P I+ K+
Sbjct: 7202 KMREKGEERRKEEKRVSFAA-EVQEKTMEAIDKSLG-LDTSMEVEPAFQKPSIIKKPMKK 7259
Query: 261 E 263
E
Sbjct: 7260 E 7260
>Z70212-9|CAA94168.1| 491|Caenorhabditis elegans Hypothetical
protein R04D3.1 protein.
Length = 491
Score = 27.1 bits (57), Expect = 5.5
Identities = 13/27 (48%), Positives = 19/27 (70%)
Frame = +3
Query: 96 GPGKNKQEKRIKKAVQEGLMKKMSSTD 176
G GKN E++I K+VQE +M ++ TD
Sbjct: 133 GMGKNLMEEQIVKSVQE-MMTQLEKTD 158
>Z50742-6|CAA90619.1| 491|Caenorhabditis elegans Hypothetical
protein R04D3.1 protein.
Length = 491
Score = 27.1 bits (57), Expect = 5.5
Identities = 13/27 (48%), Positives = 19/27 (70%)
Frame = +3
Query: 96 GPGKNKQEKRIKKAVQEGLMKKMSSTD 176
G GKN E++I K+VQE +M ++ TD
Sbjct: 133 GMGKNLMEEQIVKSVQE-MMTQLEKTD 158
>U64862-5|AAQ91890.1| 2350|Caenorhabditis elegans Lin-5 (five)
interacting proteinprotein 1, isoform d protein.
Length = 2350
Score = 27.1 bits (57), Expect = 5.5
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +3
Query: 42 PLPPKEAFRYLSHKFHGKGPGKNKQEKRIKKA 137
PLPP EA R + + F K + E+++K A
Sbjct: 522 PLPPSEALRAVRNTFRNKDNDIQQLERKLKIA 553
>U64862-4|AAZ32792.1| 2117|Caenorhabditis elegans Lin-5 (five)
interacting proteinprotein 1, isoform b protein.
Length = 2117
Score = 27.1 bits (57), Expect = 5.5
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +3
Query: 42 PLPPKEAFRYLSHKFHGKGPGKNKQEKRIKKA 137
PLPP EA R + + F K + E+++K A
Sbjct: 595 PLPPSEALRAVRNTFRNKDNDIQQLERKLKIA 626
>U64862-3|AAM69078.1| 2396|Caenorhabditis elegans Lin-5 (five)
interacting proteinprotein 1, isoform a protein.
Length = 2396
Score = 27.1 bits (57), Expect = 5.5
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +3
Query: 42 PLPPKEAFRYLSHKFHGKGPGKNKQEKRIKKA 137
PLPP EA R + + F K + E+++K A
Sbjct: 595 PLPPSEALRAVRNTFRNKDNDIQQLERKLKIA 626
>Z93383-1|CAB07622.1| 150|Caenorhabditis elegans Hypothetical
protein F54B8.1 protein.
Length = 150
Score = 26.6 bits (56), Expect = 7.2
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -1
Query: 97 PFPWNLCER*RKASLGGRGRPSSSTYSS 14
PFP N+C + + G G PS+S + S
Sbjct: 31 PFPCNVCSKIYNSGCQGFGLPSASNWCS 58
>Z83116-7|CAB05566.1| 150|Caenorhabditis elegans Hypothetical
protein M01B2.8 protein.
Length = 150
Score = 26.6 bits (56), Expect = 7.2
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -1
Query: 97 PFPWNLCER*RKASLGGRGRPSSSTYSS 14
PFP N+C + + G G PS+S + S
Sbjct: 31 PFPCNVCSKIYNSGCQGFGLPSASNWCS 58
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,536,268
Number of Sequences: 27780
Number of extensions: 139954
Number of successful extensions: 454
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 401
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 454
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 683806592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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