Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_D23
         (418 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex det...    20   9.7  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    20   9.7  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    20   9.7  

>DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 20.2 bits (40), Expect = 9.7
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = -1

Query: 124 RFSCLFLPGPFP 89
           RF C+  P PFP
Sbjct: 147 RFRCIGPPTPFP 158


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 20.2 bits (40), Expect = 9.7
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = +1

Query: 256 NENQTINYIQYSNQSY 303
           N N   NY  Y+N +Y
Sbjct: 331 NNNYNNNYNNYNNNNY 346


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 20.2 bits (40), Expect = 9.7
 Identities = 6/9 (66%), Positives = 9/9 (100%)
 Frame = +3

Query: 348 PYTRDSFTL 374
           PYT+DS+T+
Sbjct: 441 PYTKDSYTV 449


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,970
Number of Sequences: 438
Number of extensions: 1947
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10626762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)